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Manganese in PDB 3qsz: Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342

Protein crystallography data

The structure of Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342, PDB code: 3qsz was solved by A.P.Kuzin, M.Su, S.M.Vorobiev, S.Sahdev, R.Xiao, C.Ciccosanti, D.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.76 / 2.39
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.115, 53.885, 70.266, 90.00, 93.44, 90.00
R / Rfree (%) 20.1 / 26.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342 (pdb code 3qsz). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342, PDB code: 3qsz:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 3qsz

Go back to Manganese Binding Sites List in 3qsz
Manganese binding site 1 out of 2 in the Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1

b:34.3
occ:1.00
OD1 A:ASP158 2.2 36.6 1.0
OD2 B:ASP163 2.2 31.5 1.0
OD2 A:ASP163 2.2 47.1 1.0
OD2 A:ASP158 2.3 27.4 1.0
OD1 B:ASP158 2.4 37.3 1.0
OD2 B:ASP158 2.5 27.0 1.0
OD1 B:ASP163 2.5 52.2 1.0
CG A:ASP158 2.6 22.6 1.0
CG B:ASP163 2.7 44.1 1.0
CG B:ASP158 2.7 24.7 1.0
OD1 A:ASP163 2.8 36.1 1.0
CG A:ASP163 2.8 40.1 1.0
CG B:ARG57 3.8 29.1 1.0
CG A:ARG57 3.9 28.4 1.0
CB A:ASP158 4.0 21.0 1.0
NE A:ARG57 4.1 37.3 1.0
CB B:ASP158 4.2 19.5 1.0
NE B:ARG57 4.2 35.0 1.0
CB B:ASP163 4.2 33.4 1.0
CB A:ASP163 4.3 26.5 1.0
O A:HOH225 4.3 34.1 1.0
O B:HOH230 4.5 49.0 1.0
CD A:ARG57 4.6 33.1 1.0
CD B:ARG57 4.7 26.9 1.0
CA A:ASP158 4.7 32.3 1.0
CA B:ASP158 4.9 32.4 1.0
CB B:ARG57 4.9 32.9 1.0
CA B:ASP163 4.9 29.7 1.0
CA A:ASP163 5.0 29.3 1.0
O A:HOH221 5.0 37.0 1.0
N B:ASP163 5.0 25.2 1.0

Manganese binding site 2 out of 2 in 3qsz

Go back to Manganese Binding Sites List in 3qsz
Manganese binding site 2 out of 2 in the Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Star-Related Lipid Transfer Protein (Fragment 25-204) From Xanthomonas Axonopodis at the Resolution 2.4A, Northeast Structural Genomics Consortium Target XAR342 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn2

b:90.5
occ:1.00
OD1 B:ASP81 2.4 51.4 1.0
CG B:ASP81 3.4 48.7 1.0
OD2 B:ASP81 3.8 52.5 1.0
O B:ALA103 4.2 49.0 1.0
O B:HOH220 4.3 55.9 1.0
C B:ALA103 4.5 49.5 1.0
OG B:SER102 4.6 52.8 1.0
CB B:ASP81 4.7 42.5 1.0
CA B:PRO104 4.7 56.7 1.0
N B:PRO104 4.8 47.1 1.0
CA B:ASP81 4.9 41.9 1.0

Reference:

A.P.Kuzin, M.Su, S.M.Vorobiev, S.Sahdev, R.Xiao, C.Ciccosanti, D.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target XAR342 To Be Published.
Page generated: Sat Oct 5 17:42:03 2024

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