Atomistry » Manganese » PDB 3m0m-3n37 » 3mjl
Atomistry »
  Manganese »
    PDB 3m0m-3n37 »
      3mjl »

Manganese in PDB 3mjl: Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.

Enzymatic activity of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.

All present enzymatic activity of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.:
3.5.3.1;

Protein crystallography data

The structure of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A., PDB code: 3mjl was solved by L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 90.680, 90.680, 69.820, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 17.6

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A. (pdb code 3mjl). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A., PDB code: 3mjl:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 3mjl

Go back to Manganese Binding Sites List in 3mjl
Manganese binding site 1 out of 4 in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn3314

b:20.3
occ:1.00
 OD1 A:ASP124 2.1 18.1 1.0
OD2 A:ASP234 2.2 19.2 1.0
O A:HOH9164 2.2 24.7 1.0
OD2 A:ASP232 2.2 18.9 1.0
ND1 A:HIS126 2.3 17.3 1.0
OD1 A:ASP234 2.4 19.9 1.0
CG A:ASP234 2.6 21.1 1.0
CE1 A:HIS126 3.1 19.6 1.0
CG A:ASP124 3.1 27.3 1.0
O A:HOH9109 3.1 24.6 1.0
CG A:ASP232 3.2 28.5 1.0
CG A:HIS126 3.3 19.6 1.0
MN A:MN3315 3.4 18.9 1.0
OD2 A:ASP124 3.4 17.4 1.0
OD1 A:ASP232 3.8 21.4 1.0
CB A:HIS126 3.8 16.6 1.0
N A:HIS126 3.9 12.9 1.0
O A:HOH9163 4.1 25.3 1.0
N A:ALA125 4.1 17.6 1.0
CB A:ASP234 4.1 19.2 1.0
OG1 A:THR246 4.1 27.2 1.0
NE2 A:HIS126 4.3 19.9 1.0
CB A:ASP232 4.3 28.7 1.0
NT A:2AI5001 4.3 74.7 1.0
CD2 A:HIS126 4.4 13.9 1.0
CB A:ASP124 4.4 26.9 1.0
CA A:HIS126 4.5 13.6 1.0
CB A:ALA125 4.5 15.3 1.0
O A:HOH9097 4.7 18.0 1.0
CA A:ALA125 4.7 13.9 1.0
OD1 A:ASP128 4.7 11.3 1.0
C A:ALA125 4.7 7.4 1.0
OD2 A:ASP128 4.8 19.8 1.0
CA A:ASP124 4.8 19.2 1.0
CE1 A:2AI5001 4.8 44.2 1.0
NE2 A:2AI5001 4.9 36.8 1.0
C A:ASP124 4.9 20.0 1.0

Manganese binding site 2 out of 4 in 3mjl

Go back to Manganese Binding Sites List in 3mjl
Manganese binding site 2 out of 4 in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn3315

b:18.9
occ:1.00
 OD2 A:ASP124 2.1 17.4 1.0
O A:HOH9164 2.1 24.7 1.0
OD2 A:ASP128 2.1 19.8 1.0
ND1 A:HIS101 2.2 18.0 1.0
OD2 A:ASP232 2.3 18.9 1.0
O A:HOH9163 2.4 25.3 1.0
CG A:ASP124 3.1 27.3 1.0
CG A:ASP128 3.1 10.4 1.0
CE1 A:HIS101 3.2 20.9 1.0
CG A:HIS101 3.2 15.0 1.0
CG A:ASP232 3.2 28.5 1.0
MN A:MN3314 3.4 20.3 1.0
OD1 A:ASP124 3.4 18.1 1.0
CB A:HIS101 3.5 17.8 1.0
CB A:ASP232 3.5 28.7 1.0
OD1 A:ASP128 3.5 11.3 1.0
O A:HOH9109 4.0 24.6 1.0
O A:HIS141 4.2 19.4 1.0
NE2 A:HIS101 4.3 16.5 1.0
OD1 A:ASP232 4.3 21.4 1.0
CD2 A:HIS101 4.3 18.1 1.0
NE1 A:TRP122 4.4 21.7 1.0
CB A:ASP124 4.4 26.9 1.0
CB A:ASP128 4.5 18.1 1.0
OE2 A:GLU277 4.6 17.6 1.0
CZ2 A:TRP122 4.7 18.9 1.0
CG A:GLU277 4.7 17.4 1.0
CE2 A:TRP122 4.9 17.1 1.0
OD2 A:ASP234 5.0 19.2 1.0
CA A:ASP232 5.0 25.6 1.0

Manganese binding site 3 out of 4 in 3mjl

Go back to Manganese Binding Sites List in 3mjl
Manganese binding site 3 out of 4 in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn4314

b:21.9
occ:1.00
 O B:HOH9161 2.0 25.9 1.0
OD1 B:ASP234 2.1 21.4 1.0
OD2 B:ASP232 2.1 18.0 1.0
ND1 B:HIS126 2.2 25.5 1.0
OD2 B:ASP234 2.3 20.2 1.0
OD1 B:ASP124 2.3 23.8 1.0
CG B:ASP234 2.5 31.9 1.0
O B:HOH9110 2.7 34.3 1.0
CG B:ASP232 3.1 22.3 1.0
CE1 B:HIS126 3.1 13.7 1.0
CG B:ASP124 3.2 23.3 1.0
MN B:MN4315 3.3 27.4 1.0
CG B:HIS126 3.3 31.0 1.0
OD2 B:ASP124 3.4 16.4 1.0
OD1 B:ASP232 3.7 23.8 1.0
CB B:HIS126 3.8 11.9 1.0
O B:HOH9162 3.8 21.6 1.0
CB B:ASP234 4.0 29.2 1.0
N B:HIS126 4.1 15.8 1.0
CB B:ASP232 4.1 21.7 1.0
OG1 B:THR246 4.2 37.8 1.0
N B:ALA125 4.3 23.7 1.0
NE2 B:HIS126 4.3 21.4 1.0
NT B:2AI5000 4.4 42.4 1.0
CD2 B:HIS126 4.4 32.6 1.0
OD1 B:ASP128 4.5 15.2 1.0
CB B:ASP124 4.5 22.0 1.0
O B:HOH9130 4.5 22.9 1.0
CA B:HIS126 4.6 20.2 1.0
OD2 B:ASP128 4.6 19.7 1.0
CA B:ASP124 4.8 15.9 1.0
O B:THR246 4.9 39.5 1.0
C B:ALA125 4.9 2.1 1.0
CB B:ALA125 4.9 15.4 1.0
CA B:ALA125 4.9 11.3 1.0
C B:ASP124 5.0 24.4 1.0

Manganese binding site 4 out of 4 in 3mjl

Go back to Manganese Binding Sites List in 3mjl
Manganese binding site 4 out of 4 in the Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of Human Arginase I in Complex with 2- Aminoimidazole. Resolution 1.90 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn4315

b:27.4
occ:1.00
 OD2 B:ASP128 2.1 19.7 1.0
OD2 B:ASP124 2.1 16.4 1.0
O B:HOH9161 2.1 25.9 1.0
ND1 B:HIS101 2.2 22.9 1.0
OD2 B:ASP232 2.4 18.0 1.0
O B:HOH9162 2.4 21.6 1.0
CG B:ASP128 3.1 19.6 1.0
CG B:ASP124 3.1 23.3 1.0
CG B:HIS101 3.1 33.1 1.0
CE1 B:HIS101 3.2 14.7 1.0
CG B:ASP232 3.3 22.3 1.0
MN B:MN4314 3.3 21.9 1.0
CB B:HIS101 3.4 36.1 1.0
OD1 B:ASP128 3.5 15.2 1.0
OD1 B:ASP124 3.6 23.8 1.0
CB B:ASP232 3.6 21.7 1.0
O B:HOH9110 3.9 34.3 1.0
CD2 B:HIS101 4.3 34.1 1.0
NE2 B:HIS101 4.3 19.0 1.0
O B:HIS141 4.3 31.2 1.0
OD1 B:ASP232 4.4 23.8 1.0
CB B:ASP128 4.4 26.4 1.0
NE1 B:TRP122 4.4 21.3 1.0
CB B:ASP124 4.4 22.0 1.0
OE2 B:GLU277 4.6 25.1 1.0
CG B:GLU277 4.7 17.4 1.0
CZ2 B:TRP122 4.7 18.4 1.0
OD1 B:ASP234 4.9 21.4 1.0
CE2 B:TRP122 4.9 23.5 1.0
CA B:HIS101 4.9 31.0 1.0
OD2 B:ASP234 5.0 20.2 1.0
CA B:ASP232 5.0 21.8 1.0

Reference:

M.Ilies, L.Di Costanzo, M.L.North, J.A.Scott, D.W.Christianson. Crystal Structure of Human Arginase I in Complex with 2-Aminoimidazole. Resolution 1.90 A. To Be Published.
Page generated: Sat Oct 5 17:07:42 2024

Last articles

Cl in 3G72
Cl in 3G4S
Cl in 3G70
Cl in 3G6Z
Cl in 3G5L
Cl in 3G5D
Cl in 3G5O
Cl in 3G4X
Cl in 3G53
Cl in 3G4Y
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy