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Manganese in PDB 3lop: Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum

Protein crystallography data

The structure of Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum, PDB code: 3lop was solved by K.Palani, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.72 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.110, 64.739, 114.085, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 19.5

Other elements in 3lop:

The structure of Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Magnesium (Mg) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum (pdb code 3lop). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum, PDB code: 3lop:

Manganese binding site 1 out of 1 in 3lop

Go back to Manganese Binding Sites List in 3lop
Manganese binding site 1 out of 1 in the Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn409

b:16.3
occ:1.00
O A:HOH568 2.4 14.3 1.0
O A:HOH566 3.3 7.1 1.0
CZ2 A:TRP65 3.9 5.6 1.0
CG A:GLU297 4.2 3.2 1.0
CH2 A:TRP65 4.6 4.6 1.0
O A:HOH462 4.7 12.0 1.0
CD A:GLU297 4.7 5.4 1.0
CB A:GLU297 4.8 3.3 1.0
OE2 A:GLU297 4.8 6.1 1.0
CE2 A:TRP65 4.9 4.6 1.0

Reference:

K.Palani, S.K.Burley, S.Swaminathan. Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum To Be Published.
Page generated: Sat Oct 5 16:50:28 2024

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