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Manganese in PDB 3jzv: Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain.

Protein crystallography data

The structure of Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain., PDB code: 3jzv was solved by U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.58 / 2.30
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 90.886, 90.886, 161.252, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 27.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain. (pdb code 3jzv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain., PDB code: 3jzv:

Manganese binding site 1 out of 1 in 3jzv

Go back to Manganese Binding Sites List in 3jzv
Manganese binding site 1 out of 1 in the Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain.


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn200

b:78.5
occ:1.00
NE2 A:HIS69 2.1 62.7 1.0
OE1 A:GLU67 2.3 63.8 1.0
NE2 A:HIS73 2.4 57.4 1.0
NE2 A:HIS107 2.5 55.9 1.0
CD2 A:HIS69 3.0 60.6 1.0
CE1 A:HIS107 3.1 54.1 1.0
CE1 A:HIS69 3.2 62.2 1.0
CD A:GLU67 3.3 63.7 1.0
CE1 A:HIS73 3.4 58.1 1.0
CD2 A:HIS73 3.4 56.8 1.0
CG A:GLU67 3.6 59.9 1.0
CD2 A:HIS107 3.7 54.2 1.0
CG A:HIS69 4.2 61.6 1.0
ND1 A:HIS69 4.3 60.9 1.0
ND1 A:HIS107 4.3 52.7 1.0
OE2 A:GLU67 4.4 64.1 1.0
ND1 A:HIS73 4.5 58.8 1.0
CG A:HIS73 4.5 55.9 1.0
CG A:HIS107 4.7 53.6 1.0
NE2 A:HIS71 4.7 64.5 1.0

Reference:

U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo. Crystal Structure of RRU_A2000 From Rhodospirillum Rubrum: A Cupin-2 Domain. To Be Published.
Page generated: Sat Oct 5 16:42:49 2024

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