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Manganese in PDB 3ib7: Crystal Structure of Full Length RV0805

Enzymatic activity of Crystal Structure of Full Length RV0805

All present enzymatic activity of Crystal Structure of Full Length RV0805:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Full Length RV0805, PDB code: 3ib7 was solved by M.Podobnik, U.Dermol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.40 / 1.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.178, 100.178, 80.248, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 17.7

Other elements in 3ib7:

The structure of Crystal Structure of Full Length RV0805 also contains other interesting chemical elements:

Iron (Fe) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Full Length RV0805 (pdb code 3ib7). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Full Length RV0805, PDB code: 3ib7:

Manganese binding site 1 out of 1 in 3ib7

Go back to Manganese Binding Sites List in 3ib7
Manganese binding site 1 out of 1 in the Crystal Structure of Full Length RV0805


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Full Length RV0805 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn555

b:14.4
occ:1.00
OD1 A:ASN97 2.2 22.6 1.0
O A:HOH470 2.2 16.9 1.0
OD2 A:ASP63 2.2 23.7 1.0
OXT A:ACT666 2.2 15.4 0.8
NE2 A:HIS169 2.3 22.8 1.0
ND1 A:HIS207 2.3 23.8 1.0
CE1 A:HIS207 3.1 23.1 1.0
CG A:ASP63 3.1 24.0 1.0
CE1 A:HIS169 3.2 22.6 1.0
CG A:ASN97 3.2 23.5 1.0
C A:ACT666 3.2 16.3 0.8
CD2 A:HIS169 3.3 22.5 1.0
FE A:FE444 3.3 14.3 1.0
CG A:HIS207 3.4 24.0 1.0
OD1 A:ASP63 3.5 23.9 1.0
O A:ACT666 3.5 16.1 0.8
ND2 A:ASN97 3.6 22.8 1.0
CA A:HIS207 3.8 23.6 1.0
CB A:HIS207 3.9 23.4 1.0
OD1 A:ASP21 4.0 23.9 1.0
O A:HIS207 4.2 23.6 1.0
NE2 A:HIS207 4.3 24.4 1.0
CD2 A:HIS98 4.3 24.1 1.0
ND1 A:HIS169 4.3 21.5 1.0
CG A:HIS169 4.4 22.2 1.0
CB A:ASP63 4.4 24.0 1.0
CD2 A:HIS207 4.5 24.4 1.0
N A:ASN97 4.5 23.1 1.0
C A:HIS207 4.5 23.3 1.0
CB A:ASN97 4.6 23.7 1.0
CH3 A:ACT666 4.6 16.6 0.8
N A:HIS207 4.8 23.2 1.0
NE2 A:HIS98 4.9 23.2 1.0

Reference:

M.Podobnik, R.Tyagi, N.Matange, U.Dermol, A.K.Gupta, R.Mattoo, K.Seshadri, S.S.Visweswariah. A Mycobacterial Cyclic Amp Phosphodiesterase That Moonlights As A Modifier of Cell Wall Permeability J.Biol.Chem. V. 284 32846 2009.
ISSN: ISSN 0021-9258
PubMed: 19801656
DOI: 10.1074/JBC.M109.049635
Page generated: Sat Oct 5 16:33:50 2024

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