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Manganese in PDB 3fgo: Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

Enzymatic activity of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp

All present enzymatic activity of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp:
3.6.3.8;

Protein crystallography data

The structure of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp, PDB code: 3fgo was solved by M.Laursen, M.Bublitz, K.Moncoq, C.Olesen, J.V.Moller, H.S.Young, P.Nissen, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.93 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 101.427, 108.872, 274.308, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.7

Other elements in 3fgo:

The structure of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp also contains other interesting chemical elements:

Fluorine (F) 8 atoms
Magnesium (Mg) 4 atoms
Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp (pdb code 3fgo). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 3 binding sites of Manganese where determined in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp, PDB code: 3fgo:
Jump to Manganese binding site number: 1; 2; 3;

Manganese binding site 1 out of 3 in 3fgo

Go back to Manganese Binding Sites List in 3fgo
Manganese binding site 1 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1006

b:0.4
occ:1.00
 O2 A:CZA1005 2.2 0.2 1.0
O1 A:CZA1005 2.3 0.3 1.0
OE1 A:GLN56 2.3 0.3 1.0
O A:HOH1072 2.4 99.5 1.0
O A:HOH1133 2.7 81.1 1.0
O A:HOH1228 2.9 65.7 1.0
C6 A:CZA1005 3.0 0.4 1.0
C2 A:CZA1005 3.1 0.0 1.0
CD A:GLN56 3.2 0.8 1.0
C3 A:CZA1005 3.5 0.6 1.0
NE2 A:GLN56 3.7 0.8 1.0
CB A:GLN56 4.1 0.1 1.0
O A:GLN56 4.1 0.8 1.0
CA A:GLN56 4.2 0.8 1.0
CG A:GLN56 4.2 0.2 1.0
C5 A:CZA1005 4.4 0.2 1.0
C1 A:CZA1005 4.5 0.9 1.0
CG2 A:VAL62 4.6 0.4 1.0
O A:ASN101 4.6 0.8 1.0
C A:GLN56 4.6 1.0 1.0
OD2 A:ASP59 4.7 0.5 1.0
C4 A:CZA1005 4.8 0.5 1.0

Manganese binding site 2 out of 3 in 3fgo

Go back to Manganese Binding Sites List in 3fgo
Manganese binding site 2 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1008

b:0.1
occ:0.75
 O1A A:ACP1007 2.7 94.9 0.8
O3A A:ACP1007 3.1 0.9 0.8
O1B A:ACP1007 3.1 79.3 0.8
PA A:ACP1007 3.3 0.8 0.8
C3B A:ACP1007 3.5 38.8 0.8
O2A A:ACP1007 3.5 0.9 0.8
PB A:ACP1007 3.5 98.7 0.8
O A:HOH1162 3.9 63.5 1.0
NZ A:LYS205 4.1 95.3 1.0
O3G A:ACP1007 4.1 0.5 0.8
O A:HOH1050 4.1 71.0 1.0
PG A:ACP1007 4.4 0.8 0.8
CE A:LYS205 4.5 81.8 1.0
O A:HOH1094 4.5 53.1 1.0
O A:HOH1097 4.6 46.3 1.0
O5' A:ACP1007 4.7 80.4 0.8
O A:HOH1191 4.8 78.6 1.0
NZ A:LYS492 4.9 78.7 1.0
O2B A:ACP1007 5.0 92.5 0.8

Manganese binding site 3 out of 3 in 3fgo

Go back to Manganese Binding Sites List in 3fgo
Manganese binding site 3 out of 3 in the Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of the E2 Magnesium Fluoride Complex of the (Sr) CA2+-Atpase with Bound Cpa and Amppcp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn1006

b:96.8
occ:1.00
 O2 B:CZA1005 2.1 90.1 1.0
OE1 B:GLN56 2.2 89.9 1.0
O B:HOH1054 2.2 86.3 1.0
O B:HOH1053 2.2 80.2 1.0
O1 B:CZA1005 2.9 0.6 1.0
CD B:GLN56 3.0 93.2 1.0
C6 B:CZA1005 3.1 92.0 1.0
O B:HOH1174 3.2 84.6 1.0
NE2 B:GLN56 3.2 81.8 1.0
C2 B:CZA1005 3.6 99.4 1.0
C3 B:CZA1005 3.7 93.7 1.0
O B:GLN56 4.4 0.5 1.0
C5 B:CZA1005 4.4 91.2 1.0
CG B:GLN56 4.4 0.1 1.0
O B:ASN101 4.5 93.0 1.0
CA B:GLY105 4.6 0.3 1.0
OD2 B:ASP59 4.8 0.9 1.0
CB B:GLN56 4.9 0.5 1.0
CG2 B:VAL62 4.9 94.8 1.0
CA B:GLN56 5.0 0.7 1.0
C4 B:CZA1005 5.0 92.4 1.0

Reference:

M.Laursen, M.Bublitz, K.Moncoq, C.Olesen, J.V.Moeller, H.S.Young, P.Nissen, J.P.Morth. Cyclopiazonic Acid Is Complexed to A Divalent Metal Ion When Bound to the Sarcoplasmic Reticulum CA2+-Atpase. J.Biol.Chem. 2009.
ISSN: ESSN 1083-351X
PubMed: 19289472
DOI: 10.1074/JBC.C900031200
Page generated: Sat Oct 5 16:17:11 2024

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