Manganese in PDB 3eil: Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese

The structure of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese, PDB code: 3eil was solved by H.Millonig, J.Pous, L.J.Campos, J.A.Subirana, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.93 / 2.60
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	43.795, 43.795, 98.345, 90.00, 90.00, 120.00
R / Rfree (%)	23.5 / 28.5

The binding sites of Manganese atom in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese (pdb code 3eil). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 7 binding sites of Manganese where determined in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese, PDB code: 3eil:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7;

Manganese binding site 1 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn39 b:62.0 occ:0.80 OP1 A:DG12 2.1 55.2 1.0 P A:DG12 3.5 55.8 1.0 O3' A:DC11 4.1 55.3 1.0 OP2 A:DG12 4.4 57.2 1.0 O5' A:DG12 4.6 56.0 1.0 C5' A:DG12 4.9 55.8 1.0

Manganese binding site 2 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn35 b:49.6 occ:0.80 O B:HOH36 2.1 47.0 1.0 O B:HOH38 2.3 44.8 1.0 N7 D:DG12 2.3 62.3 1.0 N7 B:DG12 2.4 59.1 1.0 C8 D:DG12 3.0 61.6 1.0 C8 B:DG12 3.1 58.2 1.0 C5 D:DG12 3.5 62.2 1.0 C5 B:DG12 3.7 58.7 1.0 OP2 B:DG12 3.8 54.8 1.0 O6 D:DG12 4.1 62.8 1.0 O6 B:DG12 4.2 59.5 1.0 C6 D:DG12 4.2 63.2 1.0 OP2 D:DG12 4.2 59.7 1.0 N9 D:DG12 4.3 61.0 1.0 C6 B:DG12 4.4 60.0 1.0 N9 B:DG12 4.4 57.1 1.0 C4 D:DG12 4.6 61.9 1.0 C4 B:DG12 4.7 58.1 1.0

Manganese binding site 3 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn36 b:64.9 occ:0.80 N7 C:DG12 2.4 59.3 1.0 C8 C:DG12 3.3 59.6 1.0 C5 C:DG12 3.5 59.2 1.0 O6 C:DG12 3.7 60.5 1.0 OP2 C:DG12 3.9 54.5 1.0 C6 C:DG12 3.9 59.7 1.0 N9 C:DG12 4.5 59.7 1.0 C4 C:DG12 4.6 59.7 1.0

Manganese binding site 4 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn41 b:62.8 occ:0.80 OP1 C:DG12 2.1 54.7 1.0 P C:DG12 3.4 55.9 1.0 O3' C:DC11 4.1 55.2 1.0 OP2 C:DG12 4.1 54.5 1.0 O5' C:DG12 4.6 56.3 1.0

Manganese binding site 5 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ D:Mn38 b:62.7 occ:0.80 O D:HOH43 2.2 44.9 1.0 OP2 D:DT7 2.9 61.5 1.0 OP1 D:DT7 3.6 61.9 1.0 P D:DT7 3.7 62.3 1.0 O3' D:DA6 4.4 60.5 1.0 C3' D:DA6 4.8 58.7 1.0

Manganese binding site 6 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn37 b:71.5 occ:1.00 N7 F:DG12 2.2 69.6 1.0 O F:HOH44 2.3 53.5 1.0 O F:HOH45 2.3 41.0 1.0 C8 F:DG12 3.0 72.4 1.0 C5 F:DG12 3.4 79.9 1.0 O6 F:DG12 3.8 74.1 1.0 C6 F:DG12 4.0 86.6 1.0 N9 F:DG12 4.3 54.5 1.0 C4 F:DG12 4.5 60.1 1.0 OP2 F:DG12 4.5 55.1 1.0

Manganese binding site 7 out of 7 in the Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of B-Dna D(Cgttaattaacg)2 in the Presence of Manganese within 5.0Å range: probe atom residue distance (Å) B Occ F:Mn40 b:64.0 occ:0.80 OP1 F:DG12 2.4 45.0 1.0 O F:HOH41 2.4 41.6 1.0 P F:DG12 3.9 60.8 1.0 O3' F:DC11 4.4 55.9 1.0 O5' F:DG12 4.7 60.2 1.0 OP2 F:DG12 4.8 55.1 1.0

H.Millonig, J.Pous, C.Gouyette, J.A.Subirana, J.L.Campos. The Interaction of Manganese Ions with Dna J.Inorg.Biochem. V. 103 876 2009.
ISSN: ISSN 0162-0134
PubMed: 19375803
DOI: 10.1016/J.JINORGBIO.2009.03.004