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Manganese in PDB 3bzj: Uvde K229L

Protein crystallography data

The structure of Uvde K229L, PDB code: 3bzj was solved by E.M.Meulenbroek, K.Paspaleva, E.A.J.Thomassen, J.P.Abrahams, N.Goosen, N.S.Pannu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.28 / 2.30
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 113.390, 113.390, 89.390, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 24.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Uvde K229L (pdb code 3bzj). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Uvde K229L, PDB code: 3bzj:

Manganese binding site 1 out of 1 in 3bzj

Go back to Manganese Binding Sites List in 3bzj
Manganese binding site 1 out of 1 in the Uvde K229L


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Uvde K229L within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn281

b:65.2
occ:1.00
O A:HOH328 2.2 35.7 1.0
NE2 A:HIS203 2.4 33.1 1.0
NE2 A:HIS244 2.5 31.4 1.0
CD2 A:HIS203 3.1 31.8 1.0
CE1 A:HIS203 3.3 30.8 1.0
CD2 A:HIS244 3.4 32.1 1.0
CE1 A:HIS244 3.5 34.9 1.0
OD2 A:ASP200 3.7 35.1 1.0
O A:GLY242 4.1 28.4 1.0
CG A:HIS203 4.2 29.9 1.0
ND1 A:HIS203 4.2 31.0 1.0
OD1 A:ASP200 4.3 33.9 1.0
OE2 A:GLU178 4.3 36.0 0.5
CG A:ASP200 4.4 32.3 1.0
OE1 A:GLU269 4.4 47.9 1.0
CD2 A:LEU202 4.5 25.2 1.0
CG A:HIS244 4.6 30.7 1.0
ND1 A:HIS244 4.6 34.0 1.0

Reference:

E.M.Meulenbroek, K.Paspaleva, E.A.Thomassen, J.P.Abrahams, N.Goosen, N.S.Pannu. Involvement of A Carboxylated Lysine in Uv Damage Endonuclease Protein Sci. V. 18 549 2009.
ISSN: ISSN 0961-8368
PubMed: 19241382
DOI: 10.1002/PRO.54
Page generated: Sat Oct 5 15:59:16 2024

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