Manganese in PDB 3bdk: Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue

Enzymatic activity of Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue

All present enzymatic activity of Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue:
4.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue, PDB code: 3bdk was solved by F.Gao, Q.M.Zhang, H.Peng, Y.W.Liu, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.27 / 2.50
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	105.468, 105.468, 160.155, 90.00, 90.00, 90.00
*R / R_free (%)*	25 / 30.3

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue (pdb code 3bdk). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue, PDB code: 3bdk:

Manganese binding site 1 out of 1 in 3bdk

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Manganese Binding Sites List in 3bdk

Manganese binding site 1 out of 1 in the Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn388 b:0.9 occ:1.00	O2	A:DNO387	2.4	76.0	1.0
	OD2	A:ASP330	2.5	44.0	1.0
	NE2	A:HIS219	2.5	43.7	1.0
	ND1	A:HIS286	2.5	35.3	1.0
	CE1	A:HIS286	2.6	35.8	1.0
	CG	A:ASP330	3.3	45.1	1.0
	CE1	A:HIS219	3.3	44.2	1.0
	OD1	A:ASP330	3.3	46.9	1.0
	CD2	A:HIS219	3.4	42.1	1.0
	C2	A:DNO387	3.6	76.1	1.0
	CG	A:HIS286	3.8	34.5	1.0
	NE2	A:HIS286	3.8	35.3	1.0
	CE1	A:HIS331	4.1	47.0	1.0
	O1	A:DNO387	4.1	74.6	1.0
	OE2	A:GLU84	4.2	54.8	1.0
	O5	A:DNO387	4.3	77.9	1.0
	C1	A:DNO387	4.3	76.0	1.0
	NH2	A:ARG328	4.3	47.9	1.0
	ND1	A:HIS219	4.4	43.6	1.0
	CD2	A:HIS286	4.4	35.1	1.0
	CG	A:HIS219	4.5	41.5	1.0
	OH	A:TYR345	4.5	41.9	1.0
	SG	A:CYS257	4.5	36.0	1.0
	NH1	A:ARG328	4.6	49.2	1.0
	NH2	A:ARG288	4.6	44.6	1.0
	CB	A:ASP330	4.7	45.2	1.0
	CZ	A:ARG328	4.7	47.6	1.0
	CB	A:HIS286	4.7	34.2	1.0
	ND1	A:HIS331	4.8	46.2	1.0
	O3	A:DNO387	4.8	77.2	1.0
	C3	A:DNO387	4.8	76.7	1.0

Reference:

F.Gao, Q.M.Zhang, H.Peng, Y.W.Liu, J.X.Qi, G.F.Gao. Crystal Structure of Streptococcus Suis Mannonate Dehydratase Complexed with Substrate Analogue To Be Published.

Page generated: Sat Aug 16 11:30:22 2025

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