Manganese in PDB 2z7b: Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase

Enzymatic activity of Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase

All present enzymatic activity of Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase:
4.1.1.51;

Protein crystallography data

The structure of Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase, PDB code: 2z7b was solved by K.M.Mcculloch, T.Mukherjee, S.E.Ealick, T.P.Begley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.30 / 1.90
*Space group*	I 4
*Cell size a, b, c (Å), α, β, γ (°)*	71.960, 71.960, 90.360, 90.00, 90.00, 90.00
*R / R_free (%)*	19.6 / 24.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase (pdb code 2z7b). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase, PDB code: 2z7b:

Manganese binding site 1 out of 1 in 2z7b

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Manganese Binding Sites List in 2z7b

Manganese binding site 1 out of 1 in the Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Mesorhizobium Loti 3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate Decarboxylase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn235 b:47.9 occ:1.00	NE2	A:HIS92	2.2	31.0	1.0
	NE2	A:HIS94	2.6	34.1	1.0
	NE2	A:HIS163	2.8	31.3	1.0
	OE1	A:GLU73	2.8	47.1	1.0
	OE2	A:GLU73	3.0	46.2	1.0
	CE1	A:HIS163	3.1	29.6	1.0
	CD2	A:HIS92	3.2	28.1	1.0
	CE1	A:HIS92	3.2	29.9	1.0
	CD	A:GLU73	3.3	45.8	1.0
	CE1	A:HIS94	3.5	36.8	1.0
	CD2	A:HIS94	3.7	34.3	1.0
	CD2	A:HIS163	3.8	31.0	1.0
	ND1	A:HIS163	4.1	30.5	1.0
	ND1	A:HIS92	4.3	29.0	1.0
	CG	A:HIS92	4.3	26.8	1.0
	CG	A:HIS163	4.5	27.8	1.0
	ND1	A:HIS94	4.6	35.3	1.0
	CG	A:GLU73	4.8	44.2	1.0
	CG	A:HIS94	4.8	31.0	1.0
	CZ	A:PHE138	4.8	53.3	1.0
	CE1	A:PHE138	5.0	53.1	1.0

Reference:

T.Mukherjee, K.M.Mcculloch, S.E.Ealick, T.P.Begley. Gene Identification and Structural Characterization of the Pyridoxal 5'-Phosphate Degradative Protein 3-Hydroxy-2-Methylpyridine-4,5-Dicarboxylate Decarboxylase From Mesorhizobium Loti MAFF303099 Biochemistry V. 46 13606 2007.
ISSN: ISSN 0006-2960
PubMed: 17973403
DOI: 10.1021/BI701439J

Page generated: Sat Aug 16 11:14:07 2025

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