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Manganese in PDB 2jlg: Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase

Enzymatic activity of Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase

All present enzymatic activity of Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase:
2.7.7.48;

Protein crystallography data

The structure of Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase, PDB code: 2jlg was solved by M.M.Poranen, P.S.Salgado, M.R.L.Koivunen, S.Wright, D.H.Bamford, D.I.Stuart, J.M.Grimes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.944 / 2.8
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 109.026, 109.026, 158.835, 90.00, 90.00, 120.00
R / Rfree (%) 21.56 / 29.47

Manganese Binding Sites:

The binding sites of Manganese atom in the Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase (pdb code 2jlg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase, PDB code: 2jlg:

Manganese binding site 1 out of 1 in 2jlg

Go back to Manganese Binding Sites List in 2jlg
Manganese binding site 1 out of 1 in the Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structural Explanation For the Role of Mn in the Activity of PHI6 Rna-Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn1667

b:43.4
occ:1.00
 O C:VAL325 2.3 54.0 1.0
O2B C:GTP1666 2.5 39.3 1.0
O3A C:GTP1666 2.6 59.7 1.0
OD2 C:ASP324 2.6 42.4 1.0
OD1 C:ASP453 2.7 23.2 1.0
O2G C:GTP1666 2.7 51.5 1.0
O1A C:GTP1666 2.7 30.0 1.0
PB C:GTP1666 3.1 50.1 1.0
OD1 C:ASP324 3.1 32.0 1.0
PA C:GTP1666 3.2 49.8 1.0
CG C:ASP324 3.2 49.2 1.0
C C:VAL325 3.2 38.5 1.0
CG C:ASP453 3.5 23.3 1.0
OD2 C:ASP453 3.6 29.6 1.0
N C:SER326 3.6 33.3 1.0
PG C:GTP1666 3.8 35.3 1.0
C5' C:GTP1666 3.9 40.4 1.0
O3B C:GTP1666 3.9 43.1 1.0
O5' C:GTP1666 4.0 57.2 1.0
O3G C:GTP1666 4.3 35.8 1.0
N C:VAL325 4.3 26.3 1.0
O1B C:GTP1666 4.4 56.0 1.0
OD1 C:ASP454 4.4 28.0 1.0
O2A C:GTP1666 4.4 55.2 1.0
CA C:VAL325 4.5 24.4 1.0
CB C:ASP324 4.7 42.6 1.0
N C:ASP327 4.8 47.1 1.0
CB C:ASP453 4.9 21.2 1.0

Reference:

M.M.Poranen, P.S.Salgado, M.R.L.Koivunen, S.Wright, D.H.Bamford, D.I.Stuart, J.M.Grimes. Structural Explanation For the Role of MN2+ in the Activity of {Phi}6 Rna-Dependent Rna Polymerase. Nucleic Acids Res. V. 36 6633 2008.
ISSN: ISSN 0305-1048
PubMed: 18940872
DOI: 10.1093/NAR/GKN632
Page generated: Sat Aug 16 10:33:10 2025

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