Manganese in PDB 2a2d: X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine

The structure of X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine, PDB code: 2a2d was solved by J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.20
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	119.100, 119.100, 65.900, 90.00, 90.00, 120.00
R / Rfree (%)	n/a / n/a

The binding sites of Manganese atom in the X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine (pdb code 2a2d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine, PDB code: 2a2d:

Manganese binding site 1 out of 1 in the X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed with Mn-Amppnp and N-Acetyl Glactosamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn460 b:27.7 occ:1.00 O A:HOH601 1.8 30.1 1.0 O2A A:ANP461 2.0 18.2 1.0 O A:HOH463 2.2 18.1 1.0 O1G A:ANP461 2.2 12.9 1.0 OG A:SER147 2.4 16.3 1.0 O1B A:ANP461 2.5 14.2 1.0 PG A:ANP461 3.3 48.8 1.0 PA A:ANP461 3.4 34.4 1.0 PB A:ANP461 3.4 23.0 1.0 CB A:SER147 3.5 8.7 1.0 N3B A:ANP461 3.5 42.0 1.0 O3A A:ANP461 3.8 28.0 1.0 O3G A:ANP461 3.9 28.4 1.0 O A:HOH474 4.0 20.3 1.0 OE2 A:GLU179 4.0 21.4 1.0 C8 A:A2G459 4.1 22.9 1.0 O1 A:A2G459 4.1 29.7 1.0 CA A:SER145 4.3 11.5 1.0 OD2 A:ASP190 4.3 20.7 1.0 O A:HOH691 4.3 32.9 1.0 O1A A:ANP461 4.3 7.5 1.0 N A:SER147 4.3 16.7 1.0 O5' A:ANP461 4.3 24.1 1.0 CA A:SER147 4.3 14.2 1.0 O A:HOH491 4.3 19.7 1.0 CG A:LYS234 4.4 23.6 1.0 CE A:LYS234 4.4 79.3 1.0 N A:SER148 4.5 12.0 1.0 C7 A:A2G459 4.5 3.3 1.0 OG A:SER148 4.5 14.8 1.0 O2G A:ANP461 4.6 31.2 1.0 OG A:SER145 4.7 38.2 1.0 N2 A:A2G459 4.7 13.5 1.0 O2B A:ANP461 4.8 42.3 1.0 C A:SER145 4.8 14.8 1.0 C A:SER147 4.8 8.8 1.0 CB A:SER145 4.9 19.4 1.0 N A:SER145 4.9 18.6 1.0 CD A:LYS234 5.0 32.4 1.0

J.B.Thoden, H.M.Holden. The Molecular Architecture of Human N-Acetylgalactosamine Kinase. J.Biol.Chem. V. 280 32784 2005.
ISSN: ISSN 0021-9258
PubMed: 16006554
DOI: 10.1074/JBC.M505730200