Manganese in PDB 1zco: Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase

Enzymatic activity of Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase

All present enzymatic activity of Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase:
4.1.2.15;

Protein crystallography data

The structure of Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase, PDB code: 1zco was solved by L.R.Schofield, B.F.Anderson, M.L.Patchett, G.E.Norris, G.B.Jameson, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.80 / 2.25
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	87.231, 110.024, 144.350, 90.00, 90.00, 90.00
*R / R_free (%)*	18.2 / 23.1

Other elements in 1zco:

The structure of Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase (pdb code 1zco). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase, PDB code: 1zco:

Manganese binding site 1 out of 1 in 1zco

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Manganese Binding Sites List in 1zco

Manganese binding site 1 out of 1 in the Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn900 b:36.5 occ:0.25	OE2	B:GLU227	2.0	41.3	1.0
	SG	B:CYS31	2.1	38.0	1.0
	NE2	B:HIS201	2.7	54.0	1.0
	OD2	B:ASP238	2.7	66.9	1.0
	CE1	B:HIS201	3.0	53.5	1.0
	CB	B:CYS31	3.1	34.3	1.0
	CD	B:GLU227	3.2	33.8	1.0
	CG	B:ASP238	3.6	58.3	1.0
	O	B:HOH2011	3.6	57.4	1.0
	NZ	B:LYS60	3.8	42.5	0.3
	CA	B:CYS31	3.8	32.6	1.0
	CD2	B:HIS201	3.9	51.8	1.0
	OE1	B:GLU227	3.9	37.1	1.0
	CE	B:LYS60	4.2	44.6	0.3
	ND1	B:HIS201	4.2	50.9	1.0
	OD1	B:ASP238	4.3	61.0	1.0
	C3	B:PEP1901	4.3	34.4	0.5
	CG	B:GLU227	4.3	29.8	1.0
	CB	B:ASP238	4.3	52.8	1.0
	NZ	B:LYS60	4.4	45.1	0.4
	CE	B:LYS60	4.4	46.1	0.4
	NE2	B:GLN241	4.4	54.3	1.0
	C2	B:PEP1901	4.4	34.2	0.5
	O1	B:PEP1901	4.4	26.8	0.5
	C1	B:PEP1901	4.4	33.2	0.5
	NH2	B:ARG55	4.6	44.8	1.0
	CG	B:HIS201	4.7	41.8	1.0
	C	B:CYS31	4.7	32.4	1.0
	N	B:CYS31	4.9	32.2	1.0
	O	B:CYS31	4.9	33.7	1.0
	O2'	B:PEP1901	5.0	27.3	0.5

Reference:

L.R.Schofield, B.F.Anderson, M.L.Patchett, G.E.Norris, G.B.Jameson, E.J.Parker. Substrate Ambiguity and Crystal Structure of Pyrococcus Furiosus 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase: An Ancestral 3-Deoxyald-2-Ulosonate-Phosphate Synthase?(,) Biochemistry V. 44 11950 2005.
ISSN: ISSN 0006-2960
PubMed: 16142893
DOI: 10.1021/BI050577Z

Page generated: Sat Oct 5 13:16:28 2024

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