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Manganese in PDB 1xhb: The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1

Enzymatic activity of The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1

All present enzymatic activity of The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1:
2.4.1.41;

Protein crystallography data

The structure of The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1, PDB code: 1xhb was solved by T.A.Fritz, J.H.Hurley, L.B.Trinh, J.Shiloach, L.A.Tabak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.39 / 2.50
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 65.605, 65.605, 125.947, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 25.5

Other elements in 1xhb:

The structure of The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 (pdb code 1xhb). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1, PDB code: 1xhb:

Manganese binding site 1 out of 1 in 1xhb

Go back to Manganese Binding Sites List in 1xhb
Manganese binding site 1 out of 1 in the The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn600

b:46.5
occ:1.00
 NE2 A:HIS211 2.1 39.4 1.0
NE2 A:HIS344 2.3 36.8 1.0
OD2 A:ASP209 2.4 52.0 1.0
CE1 A:HIS211 2.8 39.8 1.0
CE1 A:HIS344 2.9 36.2 1.0
CD2 A:HIS211 3.2 39.7 1.0
CG A:ASP209 3.3 49.5 1.0
CD2 A:HIS344 3.5 36.1 1.0
CB A:ASP209 3.8 45.9 1.0
ND1 A:HIS211 4.0 38.6 1.0
ND1 A:HIS344 4.2 35.6 1.0
CG A:HIS211 4.3 40.3 1.0
OD1 A:ASP209 4.3 50.7 1.0
CG A:HIS344 4.5 34.8 1.0

Reference:

T.A.Fritz, J.H.Hurley, L.B.Trinh, J.Shiloach, L.A.Tabak. The Beginnings of Mucin Biosynthesis: the Crystal Structure of Udp-Galnac:Polypeptide {Alpha}-N-Acetylgalactosaminyltransferase-T1 Proc.Natl.Acad.Sci.Usa V. 101 15307 2004.
ISSN: ISSN 0027-8424
PubMed: 15486088
DOI: 10.1073/PNAS.0405657101
Page generated: Sat Oct 5 13:01:40 2024

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