Atomistry » Manganese » PDB 1ss9-1uvi » 1ukg
Atomistry »
  Manganese »
    PDB 1ss9-1uvi »
      1ukg »

Manganese in PDB 1ukg: Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose

Protein crystallography data

The structure of Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose, PDB code: 1ukg was solved by R.Loris, I.Van Walle, H.De Greve, S.Beeckmans, F.Deboeck, L.Wyns, J.Bouckaert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.820, 83.670, 123.000, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.5

Other elements in 1ukg:

The structure of Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose (pdb code 1ukg). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose, PDB code: 1ukg:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1ukg

Go back to Manganese Binding Sites List in 1ukg
Manganese binding site 1 out of 2 in the Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn261

b:19.9
occ:1.00
O A:HOH1267 2.1 20.5 1.0
OD1 A:ASP141 2.2 17.9 1.0
OE1 A:GLU128 2.2 16.9 1.0
OD2 A:ASP130 2.2 19.4 1.0
O A:HOH1263 2.3 16.7 1.0
NE2 A:HIS146 2.4 16.8 1.0
CG A:ASP141 3.1 18.9 1.0
CD A:GLU128 3.2 24.1 1.0
CG A:ASP130 3.2 15.5 1.0
CE1 A:HIS146 3.3 21.3 1.0
CD2 A:HIS146 3.4 18.6 1.0
OE2 A:GLU128 3.6 22.9 1.0
CB A:ASP130 3.6 16.3 1.0
OD2 A:ASP141 3.6 22.1 1.0
O A:HOH1266 3.9 19.7 1.0
CA A:CA1262 4.2 19.4 1.0
OG A:SER156 4.3 18.9 1.0
CB A:ASP141 4.3 19.1 1.0
OD1 A:ASP130 4.3 18.8 1.0
ND1 A:HIS146 4.4 17.7 1.0
O A:HOH1273 4.5 24.9 1.0
CG A:HIS146 4.5 19.9 1.0
CD1 A:TRP140 4.5 21.1 1.0
O A:ILE154 4.5 20.6 1.0
CG A:GLU128 4.5 16.0 1.0
NE1 A:TRP140 4.6 22.5 1.0
CA A:ASP141 4.8 21.7 1.0
CD A:PRO142 4.9 23.0 1.0

Manganese binding site 2 out of 2 in 1ukg

Go back to Manganese Binding Sites List in 1ukg
Manganese binding site 2 out of 2 in the Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Pterocarps Angolensis Lectin Pal in Complex with Methyl-Alpha-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn261

b:18.2
occ:1.00
OD1 B:ASP141 2.1 15.1 1.0
OE1 B:GLU128 2.2 14.9 1.0
OD2 B:ASP130 2.2 14.2 1.0
O B:HOH2264 2.2 16.1 1.0
O B:HOH2263 2.3 15.9 1.0
NE2 B:HIS146 2.3 18.5 1.0
CG B:ASP141 3.2 20.2 1.0
CE1 B:HIS146 3.2 16.2 1.0
CD B:GLU128 3.2 16.7 1.0
CG B:ASP130 3.2 18.1 1.0
CD2 B:HIS146 3.4 16.1 1.0
OE2 B:GLU128 3.6 17.5 1.0
CB B:ASP130 3.6 18.3 1.0
OD2 B:ASP141 3.6 19.2 1.0
O B:HOH2269 3.9 18.5 1.0
CA B:CA2262 4.2 17.7 1.0
OG B:SER156 4.3 17.0 1.0
OD1 B:ASP130 4.3 15.2 1.0
CB B:ASP141 4.3 17.4 1.0
ND1 B:HIS146 4.4 17.2 1.0
CG B:HIS146 4.5 16.3 1.0
O B:HOH2275 4.5 21.9 1.0
O B:ILE154 4.5 20.2 1.0
CG B:GLU128 4.5 16.5 1.0
CD1 B:TRP140 4.6 21.2 1.0
NE1 B:TRP140 4.6 19.9 1.0
CA B:ASP141 4.8 20.4 1.0
CD B:PRO142 4.9 22.6 1.0

Reference:

R.Loris, I.Van Walle, H.De Greve, S.Beeckmans, F.Deboeck, L.Wyns, J.Bouckaert. Structural Basis of Oligomannose Recognition By the Pterocarpus Angolensis Seed Lectin J.Mol.Biol. V. 335 1227 2004.
ISSN: ISSN 0022-2836
PubMed: 14729339
DOI: 10.1016/J.JMB.2003.11.043
Page generated: Sat Oct 5 12:38:27 2024

Last articles

Cl in 2WSJ
Cl in 2WS7
Cl in 2WS6
Cl in 2WQ9
Cl in 2WQO
Cl in 2WR6
Cl in 2WPS
Cl in 2WQ0
Cl in 2WQ3
Cl in 2WPZ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy