Atomistry » Manganese » PDB 1ss9-1uvi » 1tei
Atomistry »
  Manganese »
    PDB 1ss9-1uvi »
      1tei »

Manganese in PDB 1tei: Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man

Protein crystallography data

The structure of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man, PDB code: 1tei was solved by J.H.Naismith, D.N.Moothoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 176.500, 122.800, 124.600, 90.00, 134.20, 90.00
R / Rfree (%) 17.9 / 21.9

Other elements in 1tei:

The structure of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man also contains other interesting chemical elements:

Calcium (Ca) 8 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man (pdb code 1tei). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man, PDB code: 1tei:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 1 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn238

b:28.7
occ:1.00
 OD2 A:ASP10 2.0 9.4 1.0
O A:HOH247 2.1 21.8 1.0
O A:HOH246 2.2 32.6 1.0
OD1 A:ASP19 2.2 27.9 1.0
OE2 A:GLU8 2.4 21.4 1.0
NE2 A:HIS24 2.4 16.5 1.0
CG A:ASP19 3.1 25.0 1.0
CG A:ASP10 3.1 15.8 1.0
CE1 A:HIS24 3.3 14.9 1.0
CD A:GLU8 3.3 20.0 1.0
CD2 A:HIS24 3.3 17.6 1.0
OD2 A:ASP19 3.3 24.0 1.0
OE1 A:GLU8 3.5 16.6 1.0
CB A:ASP10 3.5 13.1 1.0
O A:HOH245 4.0 4.5 1.0
OG A:SER34 4.1 19.1 1.0
OD1 A:ASP10 4.2 19.0 1.0
CA A:CA239 4.3 18.9 1.0
CB A:ASP19 4.4 26.8 1.0
ND1 A:HIS24 4.4 16.8 1.0
CG A:HIS24 4.5 17.9 1.0
CG A:GLU8 4.7 13.8 1.0
O A:VAL32 4.7 16.4 1.0
CA A:ASP19 4.8 25.4 1.0

Manganese binding site 2 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 2 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn238

b:24.1
occ:1.00
 OD2 B:ASP10 1.9 20.5 1.0
O B:HOH247 2.3 15.1 1.0
O B:HOH246 2.3 24.7 1.0
OD1 B:ASP19 2.3 36.5 1.0
OE2 B:GLU8 2.4 36.3 1.0
NE2 B:HIS24 2.4 29.2 1.0
CG B:ASP10 3.0 24.7 1.0
CG B:ASP19 3.1 32.7 1.0
CE1 B:HIS24 3.2 28.6 1.0
OD2 B:ASP19 3.3 27.8 1.0
CD B:GLU8 3.3 28.9 1.0
CB B:ASP10 3.4 21.2 1.0
CD2 B:HIS24 3.4 28.9 1.0
OE1 B:GLU8 3.6 26.9 1.0
O B:HOH245 3.9 27.5 1.0
CA B:CA239 4.0 27.0 1.0
OD1 B:ASP10 4.1 20.0 1.0
OG B:SER34 4.2 22.0 1.0
ND1 B:HIS24 4.4 31.5 1.0
CB B:ASP19 4.4 33.9 1.0
CG B:HIS24 4.5 28.2 1.0
O B:VAL32 4.7 24.6 1.0
CG B:GLU8 4.7 24.3 1.0
CA B:ASP19 4.9 35.3 1.0
CA B:ASP10 4.9 22.7 1.0

Manganese binding site 3 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 3 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn238

b:24.4
occ:1.00
 O C:HOH247 2.0 19.8 1.0
O C:HOH246 2.0 21.1 1.0
OD2 C:ASP10 2.1 9.4 1.0
OE2 C:GLU8 2.3 24.1 1.0
NE2 C:HIS24 2.4 20.2 1.0
OD1 C:ASP19 2.4 28.8 1.0
CG C:ASP10 3.1 16.7 1.0
CG C:ASP19 3.2 30.1 1.0
CE1 C:HIS24 3.3 23.1 1.0
CD C:GLU8 3.3 21.4 1.0
CD2 C:HIS24 3.4 24.5 1.0
OD2 C:ASP19 3.4 21.1 1.0
CB C:ASP10 3.5 15.8 1.0
OE1 C:GLU8 3.7 21.8 1.0
O C:HOH245 4.0 9.2 1.0
OG C:SER34 4.1 22.4 1.0
OD1 C:ASP10 4.2 15.3 1.0
CA C:CA239 4.3 22.3 1.0
ND1 C:HIS24 4.4 23.3 1.0
CB C:ASP19 4.5 31.0 1.0
CG C:HIS24 4.5 26.6 1.0
O C:VAL32 4.7 25.9 1.0
CG C:GLU8 4.7 18.9 1.0
CA C:ASP19 4.8 33.9 1.0
CA C:ASP10 5.0 20.3 1.0

Manganese binding site 4 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 4 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn238

b:32.9
occ:1.00
 O D:HOH245 2.0 28.6 1.0
OD2 D:ASP10 2.1 13.4 1.0
OD1 D:ASP19 2.3 32.1 1.0
OE2 D:GLU8 2.4 25.2 1.0
NE2 D:HIS24 2.4 18.5 1.0
CG D:ASP19 3.1 29.7 1.0
CG D:ASP10 3.2 19.1 1.0
CE1 D:HIS24 3.3 23.3 1.0
CD D:GLU8 3.4 26.2 1.0
OD2 D:ASP19 3.4 24.2 1.0
CD2 D:HIS24 3.4 24.1 1.0
CB D:ASP10 3.6 18.5 1.0
OE1 D:GLU8 3.6 26.8 1.0
OG D:SER34 4.1 16.5 1.0
CA D:CA239 4.2 33.0 1.0
OD1 D:ASP10 4.3 19.2 1.0
CB D:ASP19 4.4 32.6 1.0
ND1 D:HIS24 4.4 28.3 1.0
CG D:HIS24 4.5 30.4 1.0
O D:VAL32 4.6 23.3 1.0
CG D:GLU8 4.7 25.2 1.0
CA D:ASP19 4.7 33.2 1.0
CD D:PRO20 5.0 41.0 1.0

Manganese binding site 5 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 5 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn238

b:24.2
occ:1.00
 O E:HOH247 2.0 12.3 1.0
O E:HOH246 2.1 34.0 1.0
OD1 E:ASP19 2.2 27.3 1.0
OD2 E:ASP10 2.2 8.4 1.0
OE2 E:GLU8 2.3 22.9 1.0
NE2 E:HIS24 2.5 20.1 1.0
CG E:ASP19 3.1 25.4 1.0
CD E:GLU8 3.3 21.3 1.0
CG E:ASP10 3.3 16.2 1.0
O E:HOH245 3.3 14.5 1.0
OD2 E:ASP19 3.4 22.4 1.0
CE1 E:HIS24 3.4 22.6 1.0
OE1 E:GLU8 3.5 16.7 1.0
CD2 E:HIS24 3.5 21.7 1.0
CB E:ASP10 3.7 15.7 1.0
OG E:SER34 4.0 10.3 1.0
CA E:CA239 4.1 13.3 1.0
OD1 E:ASP10 4.4 12.5 1.0
CB E:ASP19 4.4 25.5 1.0
O E:VAL32 4.5 24.6 1.0
ND1 E:HIS24 4.6 24.4 1.0
CG E:HIS24 4.7 22.1 1.0
CG E:GLU8 4.7 17.3 1.0
CA E:ASP19 4.8 28.6 1.0

Manganese binding site 6 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 6 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn238

b:50.1
occ:1.00
 O F:HOH246 1.9 16.0 1.0
OD2 F:ASP10 2.2 23.2 1.0
O F:HOH245 2.2 29.4 1.0
OE2 F:GLU8 2.3 40.2 1.0
OD1 F:ASP19 2.4 48.0 1.0
NE2 F:HIS24 2.4 36.4 1.0
CG F:ASP19 3.2 47.9 1.0
CG F:ASP10 3.2 29.9 1.0
CD F:GLU8 3.3 34.8 1.0
CE1 F:HIS24 3.3 40.4 1.0
CD2 F:HIS24 3.4 38.3 1.0
OD2 F:ASP19 3.5 46.2 1.0
OE1 F:GLU8 3.5 33.1 1.0
CB F:ASP10 3.7 28.1 1.0
OG F:SER34 3.9 24.3 1.0
CA F:CA239 4.3 52.5 1.0
OD1 F:ASP10 4.4 31.4 1.0
ND1 F:HIS24 4.4 42.8 1.0
O F:VAL32 4.5 34.4 1.0
CB F:ASP19 4.5 48.5 1.0
CG F:HIS24 4.5 39.9 1.0
CG F:GLU8 4.6 32.5 1.0
CA F:ASP19 4.8 48.2 1.0
CD F:PRO20 5.0 51.8 1.0

Manganese binding site 7 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 7 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mn238

b:32.7
occ:1.00
 O G:HOH247 2.1 13.9 1.0
OD2 G:ASP10 2.1 19.1 1.0
OE2 G:GLU8 2.2 32.8 1.0
NE2 G:HIS24 2.3 26.6 1.0
O G:HOH246 2.4 17.4 1.0
OD1 G:ASP19 2.4 31.7 1.0
CG G:ASP10 3.1 19.3 1.0
CD G:GLU8 3.2 29.1 1.0
CD2 G:HIS24 3.2 30.5 1.0
CG G:ASP19 3.3 31.4 1.0
CE1 G:HIS24 3.3 25.9 1.0
OE1 G:GLU8 3.5 28.6 1.0
CB G:ASP10 3.5 20.8 1.0
OD2 G:ASP19 3.6 30.7 1.0
OG G:SER34 4.0 26.6 1.0
O G:HOH245 4.1 29.3 1.0
OD1 G:ASP10 4.3 23.1 1.0
CG G:HIS24 4.4 32.3 1.0
ND1 G:HIS24 4.4 31.2 1.0
CA G:CA239 4.4 31.6 1.0
CG G:GLU8 4.6 25.4 1.0
CB G:ASP19 4.6 28.3 1.0
O G:VAL32 4.6 21.9 1.0
CA G:ASP19 4.9 33.5 1.0

Manganese binding site 8 out of 8 in 1tei

Go back to Manganese Binding Sites List in 1tei
Manganese binding site 8 out of 8 in the Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structure of Concanavalin A Complexed to Beta-D-Glcnac (1,2)Alpha-D- Man-(1,6)[Beta-D-Glcnac(1,2)Alpha-D-Man (1,6)]Alpha-D-Man within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mn245

b:42.6
occ:1.00
 OD2 H:ASP10 2.2 25.9 1.0
OD1 H:ASP19 2.2 47.0 1.0
OE2 H:GLU8 2.3 35.5 1.0
NE2 H:HIS24 2.4 33.0 1.0
O H:HOH248 2.6 15.9 1.0
CG H:ASP19 3.2 41.5 1.0
CD H:GLU8 3.2 33.3 1.0
CE1 H:HIS24 3.3 36.2 1.0
CG H:ASP10 3.3 27.7 1.0
CD2 H:HIS24 3.4 36.2 1.0
OE1 H:GLU8 3.4 33.5 1.0
OD2 H:ASP19 3.5 35.8 1.0
CB H:ASP10 3.7 28.1 1.0
OG H:SER34 3.9 42.4 1.0
O H:HOH247 4.1 18.7 1.0
CA H:CA246 4.3 47.6 1.0
OD1 H:ASP10 4.4 25.1 1.0
ND1 H:HIS24 4.4 38.4 1.0
CB H:ASP19 4.5 41.8 1.0
CG H:HIS24 4.5 36.4 1.0
O H:VAL32 4.5 36.4 1.0
CG H:GLU8 4.6 31.9 1.0
CA H:ASP19 4.8 41.9 1.0
CD H:PRO20 5.0 45.5 1.0

Reference:

D.N.Moothoo, J.H.Naismith. Concanavalin A Distorts the Beta-Glcnac-(1-->2)-Man Linkage of Beta-Glcnac-(1-->2)-Alpha-Man-(1-->3)-[Beta-Glcnac-(1-- >2)-Alpha-Man- (1-->6)]-Man Upon Binding. Glycobiology V. 8 173 1998.
ISSN: ISSN 0959-6658
PubMed: 9451027
DOI: 10.1093/GLYCOB/8.2.173
Page generated: Sat Oct 5 12:34:18 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy