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Manganese in PDB 1rm0: Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate

Enzymatic activity of Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate

All present enzymatic activity of Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate:
5.5.1.4;

Protein crystallography data

The structure of Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate, PDB code: 1rm0 was solved by X.Jin, K.M.Foley, J.H.Geiger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.05
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 151.810, 97.780, 122.290, 90.00, 126.30, 90.00
R / Rfree (%) 18.9 / 24.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate (pdb code 1rm0). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate, PDB code: 1rm0:

Manganese binding site 1 out of 1 in 1rm0

Go back to Manganese Binding Sites List in 1rm0
Manganese binding site 1 out of 1 in the Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Myo-Inositol 1-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Nad+ and 2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn630

b:44.9
occ:1.00
 N7N A:NAI650 2.3 51.5 1.0
OG A:SER439 2.5 31.1 1.0
O1N A:NAI650 2.8 25.2 1.0
ND2 A:ASN77 3.1 25.1 1.0
OD2 A:ASP410 3.1 24.5 1.0
O A:HOH631 3.1 29.0 1.0
C7N A:NAI650 3.4 48.6 1.0
CB A:SER439 3.6 26.3 1.0
N A:SER439 3.6 21.8 1.0
CB A:ASN76 3.7 27.4 1.0
CA A:SER439 3.7 21.8 1.0
O7N A:NAI650 3.8 51.4 1.0
ND2 A:ASN354 3.8 27.0 1.0
CG A:ASN77 4.0 25.4 1.0
C A:ASP438 4.0 20.5 1.0
PN A:NAI650 4.0 25.2 1.0
CB A:ASP438 4.1 39.2 1.0
CG A:ASP410 4.1 24.7 1.0
OD1 A:ASN76 4.2 33.1 1.0
OD1 A:ASN77 4.3 30.1 1.0
OD1 A:ASP410 4.3 22.6 1.0
O2N A:NAI650 4.4 21.3 1.0
O A:HOH672 4.4 22.9 1.0
O A:ASP438 4.4 21.3 1.0
CG A:ASN76 4.4 31.1 1.0
N A:ASN77 4.6 21.3 1.0
CA A:ASP438 4.7 21.6 1.0
O5D A:NAI650 4.7 30.6 1.0
C3N A:NAI650 4.7 47.4 1.0
OD2 A:ASP438 4.8 48.5 1.0
CG A:ASP438 4.9 44.1 1.0
OD1 A:ASP356 4.9 35.0 1.0
CA A:ASN76 4.9 23.5 1.0
C A:ASN76 4.9 22.0 1.0
C2N A:NAI650 5.0 46.1 1.0

Reference:

X.Jin, K.M.Foley, J.H.Geiger. The Structure of the 1L-Myo-Inositol-1-Phosphate Synthase-Nad+-2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate Complex Demands A Revision of the Enzyme Mechanism. J.Biol.Chem. V. 279 13889 2004.
ISSN: ISSN 0021-9258
PubMed: 14684747
DOI: 10.1074/JBC.M308986200
Page generated: Sat Oct 5 12:20:14 2024

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