Manganese in PDB 1qdh: The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna

The binding sites of Manganese atom in the The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna (pdb code 1qdh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna, PDB code: 1qdh:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn16 b:0.0 occ:1.00 OP2 A:DG11 3.7 0.0 1.0 OP2 A:DG14 3.7 0.0 1.0 H2' A:DT12 3.7 0.0 1.0 H2'' A:DT12 3.7 0.0 1.0 H3' A:DG10 3.9 0.0 1.0 OP1 A:DT13 4.0 0.0 1.0 C2' A:DT12 4.2 0.0 1.0 O3' A:DT12 4.2 0.0 1.0 OP1 A:DG14 4.4 0.0 1.0 P A:DG14 4.5 0.0 1.0 H22 A:DG14 4.5 0.0 1.0 H2'' A:DG10 4.6 0.0 1.0 P A:DT13 4.6 0.0 1.0 H2' A:DG10 4.6 0.0 1.0 C3' A:DT12 4.7 0.0 1.0 C3' A:DG10 4.7 0.0 1.0 O5' A:DT13 4.8 0.0 1.0 H3' A:DG14 4.8 0.0 1.0 C2' A:DG10 4.9 0.0 1.0 H3' A:DT12 4.9 0.0 1.0 P A:DG11 5.0 0.0 1.0 O5' A:DG14 5.0 0.0 1.0

Manganese binding site 2 out of 2 in the The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The uc(Nmr) Study of Dna Quadruplex Structure, Aptamer (15MER) Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn17 b:0.0 occ:1.00 OP1 A:DG5 3.7 0.0 1.0 H5'' A:DG1 3.7 0.0 1.0 OP2 A:DG5 4.0 0.0 1.0 OP2 A:DG2 4.2 0.0 1.0 P A:DG5 4.4 0.0 1.0 O3' A:DG1 4.6 0.0 1.0 P A:DG2 4.7 0.0 1.0 C5' A:DG1 4.8 0.0 1.0 H3' A:DG5 4.8 0.0 1.0 OP1 A:DG2 4.8 0.0 1.0 H5' A:DG1 5.0 0.0 1.0

V.M.Marathias, K.Y.Wang, S.Kumar, T.Q.Pham, S.Swaminathan, P.H.Bolton. Determination of the Number and Location of the Manganese Binding Sites of Dna Quadruplexes in Solution By Epr and uc(Nmr) in the Presence and Absence of Thrombin. J.Mol.Biol. V. 260 378 1996.
ISSN: ISSN 0022-2836
PubMed: 8757801
DOI: 10.1006/JMBI.1996.0408