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Manganese in PDB 1oab: Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II)

Enzymatic activity of Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II)

All present enzymatic activity of Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II):
4.1.2.15;

Protein crystallography data

The structure of Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II), PDB code: 1oab was solved by V.Koenig, A.Pfeil, G.Heinrich, G.H.Braus, T.R.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.9
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 196.636, 50.502, 64.930, 90.00, 106.36, 90.00
R / Rfree (%) 16 / 20.2

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II) (pdb code 1oab). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II), PDB code: 1oab:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in 1oab

Go back to Manganese Binding Sites List in 1oab
Manganese binding site 1 out of 2 in the Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn400

b:14.2
occ:1.00
 OE2 A:GLU316 2.0 13.2 1.0
O A:HOH2207 2.1 21.5 1.0
OD2 A:ASP342 2.2 15.4 1.0
NE2 A:HIS282 2.2 11.8 1.0
SG A:CYS76 2.6 10.5 1.0
CD A:GLU316 2.9 12.4 1.0
CG A:ASP342 3.1 13.0 1.0
CD2 A:HIS282 3.1 16.5 1.0
OE1 A:GLU316 3.2 15.6 1.0
CE1 A:HIS282 3.3 18.3 1.0
O1 A:PEP508 3.4 22.6 1.0
CB A:ASP342 3.6 11.7 1.0
CB A:CYS76 3.7 12.0 1.0
C1 A:PEP508 3.8 21.8 1.0
NZ A:LYS112 3.9 11.9 1.0
OD1 A:ASP342 4.1 13.1 1.0
C2 A:PEP508 4.2 23.8 1.0
NH2 A:ARG107 4.2 10.6 1.0
C3 A:PEP508 4.2 20.0 1.0
CG A:GLU316 4.3 10.8 1.0
O A:HOH2170 4.3 18.8 1.0
CA A:CYS76 4.3 13.0 1.0
CG A:HIS282 4.3 16.0 1.0
ND1 A:HIS282 4.3 14.3 1.0
O2' A:PEP508 4.4 23.2 1.0
CE A:LYS112 4.7 14.5 1.0
CA A:ASP342 4.8 12.9 1.0
N A:ASP342 4.8 12.4 1.0
O A:CYS76 4.9 11.7 1.0
CZ A:ARG107 4.9 14.7 1.0
C A:CYS76 5.0 13.2 1.0

Manganese binding site 2 out of 2 in 1oab

Go back to Manganese Binding Sites List in 1oab
Manganese binding site 2 out of 2 in the Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II)


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Tyrosine Regulated 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae in Complex with Phosphoenolpyruvate and Manganese(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn400

b:14.0
occ:1.00
 OE2 B:GLU316 1.9 11.1 1.0
OD2 B:ASP342 2.1 11.2 1.0
O B:HOH2206 2.2 20.4 1.0
NE2 B:HIS282 2.3 12.1 1.0
SG B:CYS76 2.6 9.2 1.0
CD B:GLU316 2.8 12.5 1.0
CG B:ASP342 3.0 14.9 1.0
OE1 B:GLU316 3.1 13.6 1.0
CE1 B:HIS282 3.2 13.5 1.0
CD2 B:HIS282 3.2 11.9 1.0
O1 B:PEP508 3.4 23.1 1.0
CB B:ASP342 3.5 13.4 1.0
CB B:CYS76 3.6 10.1 1.0
C1 B:PEP508 3.8 20.6 1.0
NZ B:LYS112 4.0 10.1 1.0
OD1 B:ASP342 4.1 15.5 1.0
O B:HOH2187 4.2 38.2 1.0
CG B:GLU316 4.2 11.4 1.0
CA B:CYS76 4.2 10.4 1.0
NH2 B:ARG107 4.2 11.3 1.0
C2 B:PEP508 4.2 19.8 1.0
ND1 B:HIS282 4.3 12.8 1.0
O B:HOH2179 4.3 14.5 1.0
CG B:HIS282 4.3 9.5 1.0
C3 B:PEP508 4.4 19.8 1.0
O2' B:PEP508 4.5 21.5 1.0
CA B:ASP342 4.8 13.8 1.0
CE B:LYS112 4.8 12.9 1.0
N B:ASP342 4.8 14.3 1.0
O B:CYS76 4.8 11.0 1.0
C B:CYS76 4.9 10.9 1.0
CZ B:ARG107 4.9 14.5 1.0

Reference:

V.Koenig, A.Pfeil, G.H.Braus, T.R.Schneider. Substrate and Metal Complexes of 3-Deoxy-D- Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae Provide New Insights Into the Catalytic Mechanism J.Mol.Biol. V. 337 675 2004.
ISSN: ISSN 0022-2836
PubMed: 15019786
DOI: 10.1016/J.JMB.2004.01.055
Page generated: Sat Oct 5 11:56:10 2024

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