Manganese in PDB 1m6p: Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor

The structure of Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor, PDB code: 1m6p was solved by D.L.Roberts, D.J.Weix, N.M.Dahms, J.J.-P.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	92.641, 92.641, 85.316, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 27.6

The binding sites of Manganese atom in the Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor (pdb code 1m6p). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor, PDB code: 1m6p:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn199 b:61.8 occ:1.00 O3P A:M6P200 2.5 19.9 1.0 NH2 A:ARG111 3.0 8.8 1.0 OD2 A:ASP103 3.2 30.2 1.0 O A:HOH595 3.4 28.7 1.0 NH1 A:ARG111 3.4 10.2 1.0 O A:GLU101 3.6 16.3 1.0 CZ A:ARG111 3.6 8.7 1.0 CG A:ASP103 3.7 28.2 1.0 P A:M6P200 3.9 18.5 1.0 C6 A:M6P200 4.0 19.6 1.0 N A:ASP103 4.0 16.7 1.0 O6 A:M6P200 4.2 22.8 1.0 OD1 A:ASP103 4.2 33.8 1.0 CA A:TYR102 4.3 13.2 1.0 O5 A:M6P200 4.4 18.4 1.0 CB A:ASP103 4.4 22.2 1.0 C A:TYR102 4.5 14.8 1.0 C A:GLU101 4.6 14.8 1.0 O1P A:M6P200 4.6 20.8 1.0 O2P A:M6P200 4.8 23.1 1.0 CA A:ASP103 4.9 19.1 1.0 N A:TYR102 4.9 13.1 1.0 NE A:ARG111 5.0 5.1 1.0

Manganese binding site 2 out of 2 in the Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Extracytoplasmic Domain of Bovine Cation-Dependent Mannose 6-Phosphate Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn199 b:58.2 occ:1.00 O3P B:M6P200 2.7 27.2 1.0 OD2 B:ASP103 2.8 32.6 1.0 O B:HOH615 2.9 38.6 1.0 NH2 B:ARG111 3.3 27.2 1.0 CG B:ASP103 3.6 30.4 1.0 P B:M6P200 4.1 26.9 1.0 C6 B:M6P200 4.3 27.0 1.0 CB B:ASP103 4.3 28.3 1.0 OD1 B:ASP103 4.4 31.1 1.0 O5 B:M6P200 4.4 26.0 1.0 N B:ASP103 4.5 24.4 1.0 O1P B:M6P200 4.5 29.9 1.0 O6 B:M6P200 4.5 30.4 1.0 O B:GLU101 4.6 18.8 1.0 CZ B:ARG111 4.6 25.7 1.0

D.L.Roberts, D.J.Weix, N.M.Dahms, J.J.Kim. Molecular Basis of Lysosomal Enzyme Recognition: Three-Dimensional Structure of the Cation-Dependent Mannose 6-Phosphate Receptor. Cell(Cambridge,Mass.) V. 93 639 1998.
ISSN: ISSN 0092-8674
PubMed: 9604938
DOI: 10.1016/S0092-8674(00)81192-7