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Manganese in PDB 1jjc: Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese

Enzymatic activity of Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese

All present enzymatic activity of Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese:
6.1.1.20;

Protein crystallography data

The structure of Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese, PDB code: 1jjc was solved by M.G.Safro, R.Fishman, N.Moor, V.Ankilova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 173.400, 173.400, 138.400, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 25.8

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese (pdb code 1jjc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese, PDB code: 1jjc:

Manganese binding site 1 out of 1 in 1jjc

Go back to Manganese Binding Sites List in 1jjc
Manganese binding site 1 out of 1 in the Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure at 2.6A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn901

b:32.7
occ:1.00
 O B:HOH903 2.0 36.5 1.0
OE1 B:GLU461 2.3 24.8 1.0
OE1 A:GLU262 3.2 39.2 1.0
CD B:GLU461 3.3 26.7 1.0
OD1 B:ASN163 3.8 29.3 1.0
OD2 B:ASP452 4.0 25.6 1.0
CD A:GLU262 4.0 20.3 1.0
OE2 B:GLU461 4.1 26.7 1.0
OE2 A:GLU262 4.1 37.6 1.0
CG B:GLU461 4.2 25.7 1.0
CB B:GLU461 4.2 25.2 1.0
OD1 B:ASP458 4.3 21.5 1.0
OE2 B:GLU462 4.5 25.9 1.0
O B:ASP458 4.6 25.2 1.0
CA B:ASP458 4.7 23.0 1.0
O B:ASP452 4.8 26.4 1.0
CB B:ASP458 4.8 23.1 1.0
CG B:ASP458 4.9 24.4 1.0
CG B:ASP452 4.9 25.7 1.0

Reference:

R.Fishman, V.Ankilova, N.Moor, M.Safro. Structure at 2.6 A Resolution of Phenylalanyl-Trna Synthetase Complexed with Phenylalanyl-Adenylate in the Presence of Manganese. Acta Crystallogr.,Sect.D V. 57 1534 2001.
ISSN: ISSN 0907-4449
PubMed: 11679717
DOI: 10.1107/S090744490101321X
Page generated: Sat Oct 5 11:11:03 2024

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