Manganese in PDB 1igv: Bovine Calbindin D9K Binding MN2+

The structure of Bovine Calbindin D9K Binding MN2+, PDB code: 1igv was solved by E.M.Andersson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.85
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	33.800, 33.800, 129.630, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 27.2

The binding sites of Manganese atom in the Bovine Calbindin D9K Binding MN2+ (pdb code 1igv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Bovine Calbindin D9K Binding MN2+, PDB code: 1igv:

Manganese binding site 1 out of 1 in the Bovine Calbindin D9K Binding MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Bovine Calbindin D9K Binding MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn76 b:17.7 occ:1.00 O A:GLU60 2.0 12.4 1.0 OD1 A:ASP54 2.0 10.6 1.0 O A:HOH106 2.1 14.5 1.0 O A:HOH108 2.1 19.2 1.0 OD1 A:ASP58 2.2 23.3 1.0 OD1 A:ASN56 2.2 18.2 1.0 CG A:ASP54 3.1 13.9 1.0 CG A:ASP58 3.2 20.1 1.0 C A:GLU60 3.2 11.6 1.0 CG A:ASN56 3.3 18.6 1.0 ND2 A:ASN56 3.7 15.6 1.0 OD2 A:ASP58 3.7 21.2 1.0 N A:GLU60 3.9 12.9 1.0 CA A:ASP54 3.9 15.6 1.0 OD2 A:ASP54 4.0 16.8 1.0 CB A:ASP54 4.0 14.2 1.0 CA A:GLU60 4.0 13.4 1.0 N A:ASP58 4.1 19.4 1.0 N A:VAL61 4.2 12.4 1.0 C A:ASP54 4.2 17.5 1.0 CA A:VAL61 4.4 11.1 1.0 CB A:ASP58 4.4 20.0 1.0 N A:ASN56 4.4 21.6 1.0 OE1 A:GLU65 4.5 15.1 1.0 N A:GLY57 4.5 20.0 1.0 CB A:GLU60 4.5 16.9 1.0 OE1 A:GLN22 4.5 45.8 1.0 O A:HOH143 4.6 41.6 1.0 N A:LYS55 4.6 21.1 1.0 CB A:ASN56 4.6 16.5 1.0 CA A:ASP58 4.6 18.2 1.0 O A:ASP54 4.7 16.8 1.0 N A:GLY59 4.8 18.1 1.0 C A:ASN56 4.8 19.9 1.0 CA A:ASN56 4.8 19.5 1.0 C A:ASP58 4.8 19.3 1.0

M.Andersson, A.Malmendal, S.Linse, I.Ivarsson, S.Forsen, L.A.Svensson. Structural Basis For the Negative Allostery Between Ca(2+)- and Mg(2+)-Binding in the Intracellular Ca(2+)-Receptor Calbindin D9K. Protein Sci. V. 6 1139 1997.
ISSN: ISSN 0961-8368
PubMed: 9194174