Atomistry » Manganese » PDB 1ho5-1j53 » 1hq5
Atomistry »
  Manganese »
    PDB 1ho5-1j53 »
      1hq5 »

Manganese in PDB 1hq5: Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue

Enzymatic activity of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue

All present enzymatic activity of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue:
3.5.3.1;

Protein crystallography data

The structure of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue, PDB code: 1hq5 was solved by N.N.Kim, J.D.Cox, R.F.Baggio, F.A.Emig, S.K.Mistry, S.L.Harper, D.W.Speicher, S.M.Morris Jr., D.E.Ash, A.Traish, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 91.300, 91.300, 69.400, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 19.4

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue (pdb code 1hq5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue, PDB code: 1hq5:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 1hq5

Go back to Manganese Binding Sites List in 1hq5
Manganese binding site 1 out of 4 in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn500

b:28.6
occ:1.00
OD2 A:ASP124 2.1 13.5 1.0
OD2 A:ASP128 2.1 12.2 1.0
OD2 A:ASP232 2.2 17.7 1.0
O3 A:S2C551 2.2 30.2 1.0
ND1 A:HIS101 2.2 23.2 1.0
O1 A:S2C551 2.5 28.3 1.0
B A:S2C551 2.8 30.7 1.0
CG A:HIS101 3.1 23.2 1.0
CG A:ASP128 3.2 13.3 1.0
CG A:ASP124 3.2 13.9 1.0
CB A:HIS101 3.3 22.5 1.0
O2 A:S2C551 3.3 31.6 1.0
CE1 A:HIS101 3.3 22.7 1.0
CG A:ASP232 3.3 17.4 1.0
MN A:MN501 3.4 22.3 1.0
OD1 A:ASP128 3.5 10.9 1.0
OD1 A:ASP124 3.8 12.5 1.0
CB A:ASP232 3.8 18.6 1.0
O A:HIS141 4.1 16.8 1.0
CE A:S2C551 4.2 32.5 1.0
CD2 A:HIS101 4.3 22.2 1.0
NE2 A:HIS101 4.3 20.3 1.0
OD1 A:ASP232 4.4 18.9 1.0
NE1 A:TRP122 4.4 16.1 1.0
CB A:ASP124 4.4 13.9 1.0
CB A:ASP128 4.5 12.7 1.0
CZ2 A:TRP122 4.6 17.6 1.0
CG A:GLU277 4.7 19.7 1.0
CD A:S2C551 4.7 35.3 1.0
CA A:HIS101 4.8 22.8 1.0
CE2 A:TRP122 4.9 16.6 1.0
OE2 A:GLU277 4.9 20.5 1.0

Manganese binding site 2 out of 4 in 1hq5

Go back to Manganese Binding Sites List in 1hq5
Manganese binding site 2 out of 4 in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn501

b:22.3
occ:1.00
OD1 A:ASP124 2.1 12.5 1.0
O3 A:S2C551 2.2 30.2 1.0
OD2 A:ASP234 2.3 18.6 1.0
OD1 A:ASP234 2.4 16.7 1.0
ND1 A:HIS126 2.5 13.6 1.0
CG A:ASP234 2.7 20.0 1.0
O2 A:S2C551 2.7 31.6 1.0
OD2 A:ASP232 2.7 17.7 1.0
CG A:ASP124 2.9 13.9 1.0
B A:S2C551 3.0 30.7 1.0
OD2 A:ASP124 3.1 13.5 1.0
CG A:ASP232 3.2 17.4 1.0
CE1 A:HIS126 3.3 11.7 1.0
MN A:MN500 3.4 28.6 1.0
CG A:HIS126 3.6 12.1 1.0
OD1 A:ASP232 3.6 18.9 1.0
CE A:S2C551 3.8 32.5 1.0
CB A:HIS126 3.9 12.6 1.0
CB A:ASP232 4.0 18.6 1.0
N A:HIS126 4.1 13.4 1.0
N A:ALA125 4.1 14.8 1.0
O1 A:S2C551 4.1 28.3 1.0
CB A:ASP234 4.2 17.9 1.0
CB A:ASP124 4.3 13.9 1.0
CD A:S2C551 4.3 35.3 1.0
NE2 A:HIS126 4.5 12.7 1.0
CA A:HIS126 4.6 12.2 1.0
CD2 A:HIS126 4.6 12.7 1.0
O A:HOH614 4.7 12.5 1.0
CA A:ASP124 4.7 15.2 1.0
OD1 A:ASP128 4.7 10.9 1.0
CB A:ALA125 4.8 13.2 1.0
C A:ALA125 4.8 13.7 1.0
CA A:ALA125 4.8 13.5 1.0
OD2 A:ASP128 4.8 12.2 1.0
C A:ASP124 4.9 14.9 1.0
O A:THR246 4.9 23.0 1.0
C A:ASP234 5.0 16.2 1.0
O A:ASP234 5.0 16.8 1.0

Manganese binding site 3 out of 4 in 1hq5

Go back to Manganese Binding Sites List in 1hq5
Manganese binding site 3 out of 4 in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn502

b:27.1
occ:1.00
OD2 B:ASP124 2.1 19.6 1.0
OD2 B:ASP128 2.1 13.7 1.0
OD2 B:ASP232 2.1 21.2 1.0
O3 B:S2C552 2.2 20.0 1.0
ND1 B:HIS101 2.2 11.7 1.0
O1 B:S2C552 2.5 20.1 1.0
B B:S2C552 2.8 19.6 1.0
CG B:HIS101 3.1 11.5 1.0
CG B:ASP128 3.2 14.1 1.0
CB B:HIS101 3.3 12.8 1.0
CG B:ASP124 3.3 15.2 1.0
O2 B:S2C552 3.3 18.7 1.0
CG B:ASP232 3.3 18.9 1.0
CE1 B:HIS101 3.3 13.7 1.0
MN B:MN503 3.4 18.6 1.0
OD1 B:ASP128 3.5 12.3 1.0
OD1 B:ASP124 3.8 10.2 1.0
CB B:ASP232 3.8 18.4 1.0
O B:HIS141 4.1 13.2 1.0
CE B:S2C552 4.2 20.7 1.0
CD2 B:HIS101 4.3 9.6 1.0
OD1 B:ASP232 4.3 19.0 1.0
NE2 B:HIS101 4.3 9.2 1.0
NE1 B:TRP122 4.4 16.2 1.0
CB B:ASP124 4.5 16.3 1.0
CB B:ASP128 4.5 15.7 1.0
CZ2 B:TRP122 4.6 18.1 1.0
CG B:GLU277 4.7 17.5 1.0
CD B:S2C552 4.7 22.7 1.0
CA B:HIS101 4.8 14.3 1.0
CE2 B:TRP122 4.9 16.7 1.0
OE2 B:GLU277 4.9 15.9 1.0

Manganese binding site 4 out of 4 in 1hq5

Go back to Manganese Binding Sites List in 1hq5
Manganese binding site 4 out of 4 in the Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Crystal Structure of the Binuclear Manganese Metalloenzyme Arginase Complexed with S-(2-Boronoethyl)-L-Cysteine, An L-Arginine Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mn503

b:18.6
occ:1.00
OD1 B:ASP124 2.1 10.2 1.0
O3 B:S2C552 2.2 20.0 1.0
OD2 B:ASP234 2.3 16.7 1.0
OD1 B:ASP234 2.4 14.6 1.0
ND1 B:HIS126 2.5 15.1 1.0
O2 B:S2C552 2.7 18.7 1.0
CG B:ASP234 2.7 14.3 1.0
OD2 B:ASP232 2.8 21.2 1.0
CG B:ASP124 2.9 15.2 1.0
B B:S2C552 3.0 19.6 1.0
OD2 B:ASP124 3.1 19.6 1.0
CG B:ASP232 3.2 18.9 1.0
CE1 B:HIS126 3.3 13.0 1.0
MN B:MN502 3.4 27.1 1.0
CG B:HIS126 3.6 14.2 1.0
OD1 B:ASP232 3.6 19.0 1.0
CE B:S2C552 3.8 20.7 1.0
CB B:HIS126 4.0 14.1 1.0
CB B:ASP232 4.1 18.4 1.0
N B:ALA125 4.1 13.5 1.0
N B:HIS126 4.1 14.1 1.0
O1 B:S2C552 4.1 20.1 1.0
CB B:ASP234 4.2 13.5 1.0
CB B:ASP124 4.3 16.3 1.0
CD B:S2C552 4.3 22.7 1.0
NE2 B:HIS126 4.5 13.8 1.0
CD2 B:HIS126 4.6 13.4 1.0
CA B:HIS126 4.6 14.0 1.0
CA B:ASP124 4.7 15.8 1.0
OD1 B:ASP128 4.7 12.3 1.0
CB B:ALA125 4.7 11.7 1.0
CA B:ALA125 4.8 13.1 1.0
C B:ALA125 4.8 13.6 1.0
OD2 B:ASP128 4.8 13.7 1.0
C B:ASP124 4.9 15.4 1.0
O B:THR246 4.9 19.4 1.0
C B:ASP234 5.0 14.7 1.0
O B:ASP234 5.0 17.0 1.0

Reference:

N.N.Kim, J.D.Cox, R.F.Baggio, F.A.Emig, S.K.Mistry, S.L.Harper, D.W.Speicher, S.M.Morris Jr., D.E.Ash, A.Traish, D.W.Christianson. Probing Erectile Function: S-(2-Boronoethyl)-L-Cysteine Binds to Arginase As A Transition State Analogue and Enhances Smooth Muscle Relaxation in Human Penile Corpus Cavernosum. Biochemistry V. 40 2678 2001.
ISSN: ISSN 0006-2960
PubMed: 11258879
DOI: 10.1021/BI002317H
Page generated: Sat Oct 5 10:54:01 2024

Last articles

Ca in 6QM9
Ca in 6QM5
Ca in 6QM3
Ca in 6QL0
Ca in 6QIG
Ca in 6QKN
Ca in 6QIH
Ca in 6QIX
Ca in 6QI4
Ca in 6QG9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy