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Manganese in PDB 1g93: Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose

Enzymatic activity of Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose

All present enzymatic activity of Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose:
2.4.1.151;

Protein crystallography data

The structure of Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose, PDB code: 1g93 was solved by L.N.Gastinel, C.Bignon, A.K.Misra, O.Hindsgaul, J.H.Shaper, D.H.Joziasse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.608, 95.608, 110.725, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 27.2

Other elements in 1g93:

The structure of Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose also contains other interesting chemical elements:

Mercury (Hg) 1 atom

Manganese Binding Sites:

The binding sites of Manganese atom in the Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose (pdb code 1g93). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose, PDB code: 1g93:

Manganese binding site 1 out of 1 in 1g93

Go back to Manganese Binding Sites List in 1g93
Manganese binding site 1 out of 1 in the Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of the Bovine Catalytic Domain of Alpha-1, 3-Galactosyltransferase in the Presence of Udp-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn1000

b:79.1
occ:1.00
 OD1 A:ASP227 2.4 67.4 1.0
OD2 A:ASP227 2.4 66.0 1.0
O3A A:UPG500 2.5 62.4 0.7
CG A:ASP227 2.7 63.8 1.0
OD2 A:ASP225 2.8 64.8 1.0
O A:HOH1068 2.9 59.2 1.0
O2B A:UPG500 3.3 63.8 0.7
PB A:UPG500 3.5 62.2 0.7
CG A:ASP225 3.6 61.2 1.0
PA A:UPG500 3.7 58.7 0.7
CB A:ASP225 3.7 56.3 1.0
O3B A:UPG500 3.7 62.1 0.7
O5C A:UPG500 3.9 61.7 0.7
O2' A:UPG500 4.1 58.6 0.7
O2A A:UPG500 4.1 61.8 0.7
CB A:ASP227 4.2 60.4 1.0
C5C A:UPG500 4.3 58.9 0.7
O A:ASP227 4.4 61.1 1.0
OD1 A:ASP225 4.6 62.3 1.0
C1' A:UPG500 4.8 60.0 0.7
O1A A:UPG500 4.9 62.9 0.7
C A:ASP227 4.9 60.7 1.0
C2' A:UPG500 4.9 58.8 0.7
O1B A:UPG500 5.0 64.6 0.7
CA A:ASP227 5.0 59.7 1.0
C3C A:UPG500 5.0 60.1 0.7
N A:ASP227 5.0 54.8 1.0
CB A:ALA282 5.0 41.9 1.0

Reference:

L.N.Gastinel, C.Bignon, A.K.Misra, O.Hindsgaul, J.H.Shaper, D.H.Joziasse. Bovine ALPHA1,3-Galactosyltransferase Catalytic Domain Structure and Its Relationship with Abo Histo-Blood Group and Glycosphingolipid Glycosyltransferases. Embo J. V. 20 638 2001.
ISSN: ISSN 0261-4189
PubMed: 11179209
DOI: 10.1093/EMBOJ/20.4.638
Page generated: Sat Oct 5 10:31:31 2024

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