Manganese in PDB 1c39: Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate

The structure of Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate, PDB code: 1c39 was solved by L.J.Olson, J.Zhang, Y.C.Lee, N.M.Dahms, J.J.-P.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.840, 79.310, 55.570, 90.00, 100.33, 90.00
R / Rfree (%)	21 / 24.6

The binding sites of Manganese atom in the Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate (pdb code 1c39). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate, PDB code: 1c39:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn199 b:73.2 occ:1.00 O2P A:P3M1200 3.0 30.3 1.0 OD1 A:ASP103 3.1 39.4 1.0 OA A:P3M1200 3.3 32.5 1.0 O6A A:P3M1200 3.4 31.1 1.0 NH1 A:ARG111 3.5 23.9 1.0 P A:P3M1200 3.7 30.7 1.0 C6A A:P3M1200 3.8 31.7 1.0 O4C A:P3M1200 4.1 55.8 1.0 O1P A:P3M1200 4.2 33.0 1.0 C5A A:P3M1200 4.2 31.8 1.0 C2B A:P3M1200 4.2 42.2 1.0 C1A A:P3M1200 4.3 32.8 1.0 CG A:ASP103 4.3 39.0 1.0 O1B A:P3M1200 4.6 49.5 1.0 C4C A:P3M1200 4.6 55.1 1.0 CZ A:ARG111 4.6 22.8 1.0 CB A:ASP103 4.8 36.5 1.0 NH2 A:ARG111 4.8 22.5 1.0 C1B A:P3M1200 4.9 44.7 1.0 O2B A:P3M1200 5.0 41.6 1.0

Manganese binding site 2 out of 2 in the Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Cation-Dependent Mannose 6-Phosphate Receptor Bound to Pentamannosyl Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn199 b:54.0 occ:1.00 O B:HOH649 2.1 34.3 1.0 O B:HOH671 2.1 38.6 1.0 O B:HOH650 2.2 32.6 1.0 O3P B:P3M2200 2.3 24.2 1.0 OD1 B:ASP103 2.3 29.2 1.0 O B:HOH659 2.5 56.3 1.0 CG B:ASP103 3.2 26.9 1.0 P B:P3M2200 3.5 21.1 1.0 CB B:ASP103 3.6 25.5 1.0 O B:HOH670 3.8 44.4 1.0 NH2 B:ARG111 3.9 27.8 1.0 O2P B:P3M2200 3.9 23.5 1.0 O6A B:P3M2200 4.0 22.3 1.0 O4C B:P3M2200 4.0 52.0 1.0 OD2 B:ASP103 4.1 28.3 1.0 N B:ASP103 4.2 21.3 1.0 CA B:ASP103 4.6 23.8 1.0 O1P B:P3M2200 4.8 23.2 1.0 O B:GLU101 4.8 19.0 1.0 OA B:P3M2200 4.9 21.2 1.0

L.J.Olson, J.Zhang, Y.C.Lee, N.M.Dahms, J.J.Kim. Structural Basis For Recognition of Phosphorylated High Mannose Oligosaccharides By the Cation-Dependent Mannose 6-Phosphate Receptor. J.Biol.Chem. V. 274 29889 1999.
ISSN: ISSN 0021-9258
PubMed: 10514470
DOI: 10.1074/JBC.274.42.29889