Manganese in PDB 9koq: Crystal Structure of An Arylsulfatase From Enterococcus Faecium
Protein crystallography data
The structure of Crystal Structure of An Arylsulfatase From Enterococcus Faecium, PDB code: 9koq
was solved by
L.Guo,
Y.Huang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.93 /
1.96
|
Space group
|
P 4 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
151.594,
151.594,
97.176,
90,
90,
90
|
R / Rfree (%)
|
15.7 /
17.7
|
Manganese Binding Sites:
The binding sites of Manganese atom in the Crystal Structure of An Arylsulfatase From Enterococcus Faecium
(pdb code 9koq). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the
Crystal Structure of An Arylsulfatase From Enterococcus Faecium, PDB code: 9koq:
Jump to Manganese binding site number:
1;
2;
Manganese binding site 1 out
of 2 in 9koq
Go back to
Manganese Binding Sites List in 9koq
Manganese binding site 1 out
of 2 in the Crystal Structure of An Arylsulfatase From Enterococcus Faecium
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Crystal Structure of An Arylsulfatase From Enterococcus Faecium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn501
b:25.1
occ:1.00
|
SG
|
A:ALS61
|
2.1
|
33.4
|
0.6
|
OD2
|
A:ASP311
|
2.1
|
23.7
|
1.0
|
OD1
|
A:ASP20
|
2.1
|
22.5
|
1.0
|
NE2
|
A:HIS312
|
2.2
|
23.9
|
1.0
|
OS1
|
A:ALS61
|
2.3
|
31.0
|
0.4
|
OD2
|
A:ASP20
|
2.7
|
27.7
|
1.0
|
CG
|
A:ASP20
|
2.7
|
23.6
|
1.0
|
CG
|
A:ASP311
|
2.9
|
21.3
|
1.0
|
CD2
|
A:HIS312
|
3.0
|
22.6
|
1.0
|
OD1
|
A:ASP311
|
3.1
|
20.1
|
1.0
|
CB
|
A:ALS61
|
3.1
|
26.4
|
0.4
|
CE1
|
A:HIS312
|
3.1
|
22.3
|
1.0
|
OS2
|
A:ALS61
|
3.1
|
34.1
|
0.4
|
CB
|
A:ALS61
|
3.2
|
26.5
|
0.6
|
OG
|
A:ALS61
|
3.4
|
21.5
|
0.4
|
CA
|
A:ALS61
|
3.4
|
23.9
|
0.4
|
CA
|
A:ALS61
|
3.4
|
23.6
|
0.6
|
S
|
A:ALS61
|
3.4
|
36.3
|
0.4
|
N
|
A:ALS61
|
3.8
|
24.5
|
0.4
|
N
|
A:ALS61
|
3.9
|
24.3
|
0.6
|
CB
|
A:ASP20
|
4.1
|
21.7
|
1.0
|
CG
|
A:HIS312
|
4.2
|
21.3
|
1.0
|
ND1
|
A:HIS312
|
4.2
|
20.9
|
1.0
|
NZ
|
A:LYS110
|
4.2
|
30.5
|
1.0
|
OS4
|
A:ALS61
|
4.2
|
31.6
|
0.4
|
OS3
|
A:ALS61
|
4.3
|
31.4
|
0.4
|
CB
|
A:ASP311
|
4.3
|
19.4
|
1.0
|
CD2
|
A:HIS220
|
4.4
|
29.7
|
1.0
|
N
|
A:GLN21
|
4.4
|
20.9
|
1.0
|
NE
|
A:ARG65
|
4.4
|
21.6
|
1.0
|
CA
|
A:ASP20
|
4.5
|
20.6
|
1.0
|
NH2
|
A:ARG65
|
4.5
|
21.8
|
1.0
|
OE1
|
A:GLN21
|
4.6
|
25.3
|
1.0
|
C
|
A:SER60
|
4.7
|
25.5
|
1.0
|
C
|
A:ASP20
|
4.7
|
19.0
|
1.0
|
C
|
A:ALS61
|
4.8
|
24.8
|
0.6
|
C
|
A:ALS61
|
4.8
|
24.7
|
0.4
|
CE
|
A:LYS324
|
4.9
|
30.1
|
1.0
|
CZ
|
A:ARG65
|
5.0
|
22.9
|
1.0
|
CB
|
A:GLN21
|
5.0
|
21.3
|
1.0
|
|
Manganese binding site 2 out
of 2 in 9koq
Go back to
Manganese Binding Sites List in 9koq
Manganese binding site 2 out
of 2 in the Crystal Structure of An Arylsulfatase From Enterococcus Faecium
 Mono view
 Stereo pair view
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Crystal Structure of An Arylsulfatase From Enterococcus Faecium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn501
b:27.0
occ:1.00
|
OS1
|
B:ALS61
|
1.9
|
32.2
|
0.4
|
OD2
|
B:ASP311
|
2.1
|
25.0
|
1.0
|
OD1
|
B:ASP20
|
2.1
|
28.9
|
1.0
|
NE2
|
B:HIS312
|
2.2
|
26.2
|
1.0
|
SG
|
B:ALS61
|
2.3
|
40.0
|
0.6
|
OD2
|
B:ASP20
|
2.6
|
26.5
|
1.0
|
CG
|
B:ASP20
|
2.6
|
25.8
|
1.0
|
CB
|
B:ALS61
|
2.9
|
28.7
|
0.4
|
CG
|
B:ASP311
|
2.9
|
22.3
|
1.0
|
CD2
|
B:HIS312
|
3.0
|
24.6
|
1.0
|
S
|
B:ALS61
|
3.0
|
45.7
|
0.4
|
OD1
|
B:ASP311
|
3.1
|
23.2
|
1.0
|
OS4
|
B:ALS61
|
3.2
|
37.5
|
0.4
|
CE1
|
B:HIS312
|
3.2
|
25.6
|
1.0
|
CB
|
B:ALS61
|
3.2
|
28.8
|
0.6
|
CA
|
B:ALS61
|
3.3
|
27.2
|
0.4
|
OG
|
B:ALS61
|
3.3
|
21.7
|
0.4
|
CA
|
B:ALS61
|
3.4
|
27.1
|
0.6
|
OS2
|
B:ALS61
|
3.7
|
31.6
|
0.4
|
N
|
B:ALS61
|
3.8
|
26.0
|
0.4
|
N
|
B:ALS61
|
3.8
|
26.0
|
0.6
|
OS3
|
B:ALS61
|
4.0
|
33.3
|
0.4
|
CB
|
B:ASP20
|
4.1
|
24.0
|
1.0
|
NZ
|
B:LYS110
|
4.1
|
32.4
|
1.0
|
CG
|
B:HIS312
|
4.1
|
24.7
|
1.0
|
ND1
|
B:HIS312
|
4.2
|
22.7
|
1.0
|
CD2
|
B:HIS220
|
4.2
|
32.9
|
1.0
|
CB
|
B:ASP311
|
4.3
|
22.8
|
1.0
|
N
|
B:GLN21
|
4.4
|
22.2
|
1.0
|
NE
|
B:ARG65
|
4.5
|
24.5
|
1.0
|
CA
|
B:ASP20
|
4.5
|
24.0
|
1.0
|
NH2
|
B:ARG65
|
4.5
|
21.9
|
1.0
|
OE1
|
B:GLN21
|
4.7
|
28.1
|
1.0
|
C
|
B:SER60
|
4.7
|
24.7
|
1.0
|
C
|
B:ALS61
|
4.7
|
25.8
|
0.4
|
C
|
B:ASP20
|
4.7
|
22.7
|
1.0
|
C
|
B:ALS61
|
4.7
|
25.8
|
0.6
|
CE
|
B:LYS324
|
4.9
|
29.0
|
1.0
|
CB
|
B:GLN21
|
5.0
|
25.2
|
1.0
|
|
Reference:
L.Guo,
Y.Huang.
Crystal Structure of An Arylsulfatase From Enterococcus Faecium To Be Published.
Page generated: Sun Aug 17 02:39:20 2025
|