Manganese in PDB 9jhm: Cryo-Em Structure of CPAGO_GDNA-TG_BUBBLE_DSDNA Monomeric Ternary Complex

The binding sites of Manganese atom in the Cryo-Em Structure of CPAGO_GDNA-TG_BUBBLE_DSDNA Monomeric Ternary Complex (pdb code 9jhm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Cryo-Em Structure of CPAGO_GDNA-TG_BUBBLE_DSDNA Monomeric Ternary Complex, PDB code: 9jhm:

Manganese binding site 1 out of 1 in the Cryo-Em Structure of CPAGO_GDNA-TG_BUBBLE_DSDNA Monomeric Ternary Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of CPAGO_GDNA-TG_BUBBLE_DSDNA Monomeric Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn801 b:113.4 occ:1.00 OP2 C:DT1 1.8 125.7 1.0 OP1 C:DA3 1.9 117.3 1.0 O A:LEU751 1.9 117.2 1.0 OP1 C:DT1 2.1 125.7 1.0 P C:DT1 2.2 125.7 1.0 C A:LEU751 2.8 117.2 1.0 P C:DA3 2.8 117.3 1.0 OXT A:LEU751 3.0 117.2 1.0 OP2 C:DA3 3.0 117.3 1.0 O5' C:DT1 3.3 125.7 1.0 OP3 C:DT1 3.4 125.7 1.0 O5' C:DA3 3.7 117.3 1.0 C5' C:DT1 3.9 125.7 1.0 OE1 A:GLN490 4.0 116.9 1.0 NE2 A:GLN490 4.0 116.9 1.0 O3' C:DG2 4.1 122.5 1.0 CA A:LEU751 4.2 117.2 1.0 NZ A:LYS522 4.3 117.6 1.0 CD A:GLN490 4.4 116.9 1.0 N A:LEU751 4.5 117.2 1.0 CE A:LYS522 4.6 117.6 1.0 C5' C:DA3 4.8 117.3 1.0 O A:PHE750 4.9 122.5 1.0

Y.Liu, S.Li, K.Zhang. Dimeric State and Novel Nucleotide-Binding Pocket Drive Cpago-Mediated Dna Cleavage To Be Published.