Manganese in PDB 9e1t: Cryoem Structure of LARGE1 Bound to Udp

The binding sites of Manganese atom in the Cryoem Structure of LARGE1 Bound to Udp (pdb code 9e1t). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Cryoem Structure of LARGE1 Bound to Udp, PDB code: 9e1t:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Cryoem Structure of LARGE1 Bound to Udp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryoem Structure of LARGE1 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn900 b:69.8 occ:1.00 O1B A:UDP901 2.2 19.8 1.0 O3A A:UDP901 2.2 19.8 1.0 PB A:UDP901 2.5 19.8 1.0 O2B A:UDP901 2.7 19.8 1.0 OD2 A:ASP565 2.7 56.2 1.0 NE2 A:HIS705 2.9 53.7 1.0 NE2 A:HIS708 3.1 60.0 1.0 O5' A:UDP901 3.2 19.8 1.0 PA A:UDP901 3.2 19.8 1.0 O3' A:UDP901 3.3 19.8 1.0 CD2 A:HIS705 3.5 52.2 1.0 CD2 A:HIS708 3.6 57.9 1.0 CG A:ASP565 3.7 54.8 1.0 O2A A:UDP901 3.8 19.8 1.0 CB A:ASP565 3.9 48.6 1.0 O3B A:UDP901 3.9 19.8 1.0 CE1 A:HIS705 4.0 55.8 1.0 C3' A:UDP901 4.1 19.8 1.0 CE1 A:HIS708 4.3 63.5 1.0 O1A A:UDP901 4.5 19.8 1.0 C5' A:UDP901 4.5 19.8 1.0 C4' A:UDP901 4.7 19.8 1.0 CG A:HIS705 4.8 51.1 1.0 OD1 A:ASP565 4.8 53.0 1.0 CG A:HIS708 4.9 60.7 1.0 CE1 A:PHE566 4.9 46.7 1.0 ND1 A:HIS705 5.0 58.4 1.0 OD2 A:ASP563 5.0 60.1 1.0

Manganese binding site 2 out of 2 in the Cryoem Structure of LARGE1 Bound to Udp


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryoem Structure of LARGE1 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn801 b:69.8 occ:1.00 O1B B:UDP802 2.2 19.8 1.0 O3A B:UDP802 2.2 19.8 1.0 PB B:UDP802 2.5 19.8 1.0 O2B B:UDP802 2.7 19.8 1.0 OD2 B:ASP565 2.7 56.2 1.0 NE2 B:HIS705 2.9 53.7 1.0 NE2 B:HIS708 3.1 60.0 1.0 O5' B:UDP802 3.2 19.8 1.0 PA B:UDP802 3.2 19.8 1.0 O3' B:UDP802 3.3 19.8 1.0 CD2 B:HIS705 3.5 52.2 1.0 CD2 B:HIS708 3.6 57.9 1.0 CG B:ASP565 3.7 54.8 1.0 O2A B:UDP802 3.8 19.8 1.0 CB B:ASP565 3.9 48.6 1.0 O3B B:UDP802 3.9 19.8 1.0 CE1 B:HIS705 4.0 55.8 1.0 C3' B:UDP802 4.1 19.8 1.0 CE1 B:HIS708 4.3 63.5 1.0 O1A B:UDP802 4.5 19.8 1.0 C5' B:UDP802 4.5 19.8 1.0 C4' B:UDP802 4.7 19.8 1.0 CG B:HIS705 4.8 51.1 1.0 OD1 B:ASP565 4.8 53.0 1.0 CG B:HIS708 4.9 60.7 1.0 CE1 B:PHE566 4.9 46.7 1.0 ND1 B:HIS705 5.0 58.4 1.0 OD2 B:ASP563 5.0 60.1 1.0

S.Joesph, N.Spellmon, N.J.Schnicker, Z.Xu, T.Yang, J.Hopkins, S.Chakravarthy, O.Davulcu, M.E.Anderson, D.Venzke, K.P.Campbell. Prodystroglycan Defines Matriglycan Lengths Processively Polymerized By LARGE1 To Be Published.