Manganese in PDB 9dzs: Acanthamoeba Polyphaga Mimivirus R699

The structure of Acanthamoeba Polyphaga Mimivirus R699, PDB code: 9dzs was solved by S.J.Richards, C.Buhlheller, J.S.Kim, T.Chen, J.Wu, H.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.98 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.041, 71.481, 72.626, 90, 123.18, 90
R / Rfree (%)	17.1 / 19.5

The binding sites of Manganese atom in the Acanthamoeba Polyphaga Mimivirus R699 (pdb code 9dzs). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Acanthamoeba Polyphaga Mimivirus R699, PDB code: 9dzs:

Manganese binding site 1 out of 1 in the Acanthamoeba Polyphaga Mimivirus R699


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Acanthamoeba Polyphaga Mimivirus R699 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn502 b:11.6 occ:1.00 O2B A:UDP501 2.1 12.9 1.0 O2A A:UDP501 2.2 11.9 1.0 OD2 A:ASP83 2.2 12.9 1.0 OD2 A:ASP86 2.2 10.8 1.0 NE2 A:HIS216 2.2 9.1 1.0 OD1 A:ASP86 2.4 9.3 1.0 CG A:ASP86 2.6 9.6 1.0 CE1 A:HIS216 3.2 8.4 1.0 CG A:ASP83 3.2 12.5 1.0 CD2 A:HIS216 3.3 8.8 1.0 PB A:UDP501 3.3 13.3 1.0 PA A:UDP501 3.4 12.2 1.0 O3A A:UDP501 3.5 11.9 1.0 CB A:ASP83 3.7 10.6 1.0 O3' A:UDP501 3.9 10.3 1.0 O1B A:UDP501 4.0 11.8 1.0 O1 A:GOL503 4.1 18.6 1.0 CB A:ASP86 4.1 9.3 1.0 C5' A:UDP501 4.2 11.8 1.0 C3 A:GOL503 4.2 20.9 1.0 ND1 A:HIS216 4.3 8.4 1.0 OD1 A:ASP83 4.4 10.8 1.0 CA A:ASN218 4.4 9.6 1.0 O5' A:UDP501 4.4 12.8 1.0 CG A:HIS216 4.4 8.6 1.0 NZ A:LYS222 4.4 10.9 1.0 O1A A:UDP501 4.5 13.8 1.0 O3B A:UDP501 4.5 13.2 1.0 CB A:ASN218 4.6 10.4 1.0 O3 A:GOL503 4.7 25.8 1.0 C4' A:UDP501 4.8 11.4 1.0 C3' A:UDP501 4.8 10.8 1.0

S.J.Richards, C.Buhlheller, J.S.Kim, T.Chen, J.Wu, H.Guo. Acanthamoeba Polyphaga Mimivirus R699 To Be Published.