Manganese in PDB 9dyt: Acanthamoeba Polyphaga Mimivirus R699

The structure of Acanthamoeba Polyphaga Mimivirus R699, PDB code: 9dyt was solved by S.J.Richards, C.Buhlheller, J.S.Kim, T.Chen, J.Wu, H.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.38 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	69.821, 121.696, 72.69, 90, 118.59, 90
R / Rfree (%)	19 / 22

The binding sites of Manganese atom in the Acanthamoeba Polyphaga Mimivirus R699 (pdb code 9dyt). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Acanthamoeba Polyphaga Mimivirus R699, PDB code: 9dyt:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Acanthamoeba Polyphaga Mimivirus R699


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Acanthamoeba Polyphaga Mimivirus R699 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn501 b:25.5 occ:1.00 O A:HOH808 2.0 28.7 1.0 OD2 A:ASP83 2.1 26.9 1.0 OD2 A:ASP86 2.2 22.1 1.0 NE2 A:HIS216 2.2 24.4 1.0 O A:HOH809 2.3 29.4 1.0 OD1 A:ASP86 2.4 20.1 1.0 CG A:ASP86 2.6 20.6 1.0 CG A:ASP83 3.1 28.3 1.0 CE1 A:HIS216 3.2 25.8 1.0 CD2 A:HIS216 3.2 22.3 1.0 CB A:ASP83 3.5 24.5 1.0 CB A:ASP86 4.1 20.0 1.0 OD1 A:ASP83 4.3 27.8 1.0 ND1 A:HIS216 4.3 23.9 1.0 CG A:HIS216 4.4 23.6 1.0 CA A:ASN218 4.4 27.0 1.0 CB A:ASN218 4.7 25.8 1.0 CA A:ASP83 5.0 24.7 1.0

Manganese binding site 2 out of 2 in the Acanthamoeba Polyphaga Mimivirus R699


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Acanthamoeba Polyphaga Mimivirus R699 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn501 b:22.5 occ:1.00 OD2 B:ASP83 2.2 23.9 1.0 O B:HOH790 2.2 23.4 1.0 OD2 B:ASP86 2.2 20.7 1.0 NE2 B:HIS216 2.2 22.4 1.0 O B:HOH763 2.2 23.8 1.0 OD1 B:ASP86 2.4 20.7 1.0 CG B:ASP86 2.6 21.2 1.0 CG B:ASP83 3.1 27.9 1.0 CD2 B:HIS216 3.2 17.4 1.0 CE1 B:HIS216 3.2 22.8 1.0 CB B:ASP83 3.4 20.8 1.0 CB B:ASP86 4.1 19.5 1.0 OD1 B:ASP83 4.2 25.9 1.0 ND1 B:HIS216 4.3 21.6 1.0 CG B:HIS216 4.3 19.8 1.0 CA B:ASN218 4.4 20.3 1.0 CB B:ASN218 4.7 20.1 1.0 CA B:ASP83 4.9 22.8 1.0

S.J.Richards, C.Buhlheller, J.S.Kim, T.Chen, J.Wu, H.Guo. Acanthamoeba Polyphaga Mimivirus R699 To Be Published.