Manganese in PDB 9dbc: Mn-Bound Structure of Computationally Designed Homotrimer TET4

The structure of Mn-Bound Structure of Computationally Designed Homotrimer TET4, PDB code: 9dbc was solved by A.M.Hoffnagle, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.43 / 2.30
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	71.92, 71.92, 55.49, 90, 90, 120
R / Rfree (%)	20.6 / 26.2

The binding sites of Manganese atom in the Mn-Bound Structure of Computationally Designed Homotrimer TET4 (pdb code 9dbc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Mn-Bound Structure of Computationally Designed Homotrimer TET4, PDB code: 9dbc:

Manganese binding site 1 out of 1 in the Mn-Bound Structure of Computationally Designed Homotrimer TET4


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Mn-Bound Structure of Computationally Designed Homotrimer TET4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:100.7 occ:0.21 O A:HOH314 2.1 96.7 0.3 NE2 A:HIS38 2.2 150.4 1.0 CE1 A:HIS38 2.8 151.7 1.0 CD2 A:HIS38 3.4 145.6 1.0 ND1 A:HIS38 4.1 146.0 1.0 CG A:HIS38 4.3 136.1 1.0

A.M.Hoffnagle, S.Srisantitham, M.Neeley, C.Y.Tsai, F.A.Tezcan. A De Novo Designed Protein with Versatile Metal Binding and Tunable Hydrolytic Activity. Biochemistry 2025.
ISSN: ISSN 0006-2960
PubMed: 40700614
DOI: 10.1021/ACS.BIOCHEM.5C00259