Manganese in PDB 9crz: Acanthamoeba Polyphaga Mimivirus R655

The structure of Acanthamoeba Polyphaga Mimivirus R655, PDB code: 9crz was solved by K.H.Morin, C.Buhlheller, J.S.Kim, S.J.Richards, H.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	78.17 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.634, 96.213, 133.454, 90, 90, 90
R / Rfree (%)	21 / 25.2

The binding sites of Manganese atom in the Acanthamoeba Polyphaga Mimivirus R655 (pdb code 9crz). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Acanthamoeba Polyphaga Mimivirus R655, PDB code: 9crz:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Acanthamoeba Polyphaga Mimivirus R655


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Acanthamoeba Polyphaga Mimivirus R655 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn402 b:44.2 occ:1.00 O2B A:UDP401 2.0 25.6 1.0 OD2 A:ASP95 2.1 24.9 1.0 O A:HOH664 2.2 25.1 1.0 O1A A:UDP401 2.2 25.4 1.0 O A:HOH526 2.2 22.6 1.0 O A:HOH595 2.3 28.6 1.0 CG A:ASP95 3.1 25.3 1.0 PB A:UDP401 3.2 25.6 1.0 OD1 A:ASP95 3.3 24.4 1.0 PA A:UDP401 3.4 26.6 1.0 O3A A:UDP401 3.5 25.9 1.0 O1B A:UDP401 3.6 27.6 1.0 O A:HOH535 3.9 27.8 1.0 C5' A:UDP401 4.0 26.9 1.0 O5' A:UDP401 4.2 28.8 1.0 NH2 A:ARG17 4.3 25.2 1.0 NH1 A:ARG17 4.3 23.1 1.0 O3B A:UDP401 4.4 23.4 1.0 CB A:ASP95 4.4 25.1 1.0 OE1 A:GLU93 4.5 23.6 1.0 O2A A:UDP401 4.6 27.2 1.0 O A:ASP216 4.7 30.2 1.0 CZ A:ARG17 4.7 26.5 1.0

Manganese binding site 2 out of 2 in the Acanthamoeba Polyphaga Mimivirus R655


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Acanthamoeba Polyphaga Mimivirus R655 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn402 b:44.1 occ:1.00 O1A B:UDP401 2.1 25.0 1.0 O3B B:UDP401 2.1 26.4 1.0 OD2 B:ASP95 2.1 26.1 1.0 O B:HOH583 2.2 23.2 1.0 O B:HOH660 2.2 28.9 1.0 O B:HOH524 2.4 23.7 1.0 CG B:ASP95 3.1 26.8 1.0 PB B:UDP401 3.2 27.7 1.0 PA B:UDP401 3.3 24.7 1.0 OD1 B:ASP95 3.4 23.9 1.0 O3A B:UDP401 3.5 25.6 1.0 O1B B:UDP401 3.6 30.3 1.0 O B:HOH592 3.9 40.9 1.0 NH2 B:ARG17 4.2 33.4 1.0 C5' B:UDP401 4.2 22.7 1.0 NH1 B:ARG17 4.2 30.6 1.0 O5' B:UDP401 4.3 23.8 1.0 CB B:ASP95 4.4 26.1 1.0 O2A B:UDP401 4.5 24.3 1.0 O2B B:UDP401 4.5 28.5 1.0 OE1 B:GLU93 4.6 22.1 1.0 CZ B:ARG17 4.6 32.9 1.0 O B:ASP216 4.7 33.0 1.0

J.S.Kim, C.Buhlheller, K.H.Morin, M.E.Gilliam, B.Zhang, S.J.Richards, T.M.Miller, H.Guo. Acanthamoeba Polyphaga Mimivirus R655 To Be Published.