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Manganese in PDB 9c4d: The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep

Manganese Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Manganese atom in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep (pdb code 9c4d). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 16 binding sites of Manganese where determined in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep, PDB code: 9c4d:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Manganese binding site 1 out of 16 in 9c4d

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Manganese binding site 1 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn201

b:209.5
occ:1.00
 OE1 C:GLU102 2.1 176.2 1.0
OE2 C:GLU11 2.2 190.1 1.0
ND1 C:HIS77 2.2 176.6 1.0
OE2 C:GLU102 2.3 176.2 1.0
CD C:GLU102 2.5 176.2 1.0
OE1 C:GLU11 2.6 190.1 1.0
CD C:GLU11 2.7 190.1 1.0
CE1 C:HIS77 2.8 176.6 1.0
OE1 C:GLU99 2.9 171.3 1.0
CG C:HIS77 3.4 176.6 1.0
CD C:GLU99 3.6 171.3 1.0
OE2 C:GLU99 3.8 171.3 1.0
CG C:GLU102 4.0 176.2 1.0
NE2 C:HIS77 4.0 176.6 1.0
CB C:HIS77 4.0 176.6 1.0
CG C:GLU11 4.1 190.1 1.0
MN C:MN202 4.1 245.3 1.0
CD2 C:HIS77 4.3 176.6 1.0
OD1 C:ASP8 4.4 196.6 1.0
CB C:GLU102 4.6 176.2 1.0
CA C:GLU99 4.9 171.3 1.0
CG C:GLU99 4.9 171.3 1.0
CB C:GLU11 5.0 190.1 1.0

Manganese binding site 2 out of 16 in 9c4d

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Manganese binding site 2 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn202

b:245.3
occ:1.00
 OE2 C:GLU102 2.2 176.2 1.0
OD1 C:ASP8 2.2 196.6 1.0
OE2 C:GLU99 2.2 171.3 1.0
NE2 C:HIS103 2.4 174.2 1.0
CD C:GLU99 2.6 171.3 1.0
CG C:ASP8 2.7 196.6 1.0
OD2 C:ASP8 2.7 196.6 1.0
CG C:GLU99 3.0 171.3 1.0
CD C:GLU102 3.1 176.2 1.0
CE1 C:HIS103 3.2 174.2 1.0
O C:GLU99 3.3 171.3 1.0
CD2 C:HIS103 3.4 174.2 1.0
OE1 C:GLU99 3.4 171.3 1.0
CG C:GLU102 3.6 176.2 1.0
CB C:ASP8 4.0 196.6 1.0
OE1 C:GLU102 4.0 176.2 1.0
CA C:GLU99 4.0 171.3 1.0
CB C:GLU99 4.1 171.3 1.0
MN C:MN201 4.1 209.5 1.0
C C:GLU99 4.1 171.3 1.0
ND1 C:HIS103 4.3 174.2 1.0
CG C:HIS103 4.5 174.2 1.0
CA C:ASP8 4.7 196.6 1.0
OE1 C:GLU11 4.8 190.1 1.0

Manganese binding site 3 out of 16 in 9c4d

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Manganese binding site 3 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn201

b:127.4
occ:1.00
 OE1 D:GLU102 2.1 90.1 1.0
OE2 D:GLU11 2.2 63.2 1.0
ND1 D:HIS77 2.2 101.8 1.0
OE2 D:GLU102 2.3 90.1 1.0
CD D:GLU102 2.5 90.1 1.0
OE1 D:GLU11 2.6 63.2 1.0
CD D:GLU11 2.7 63.2 1.0
CE1 D:HIS77 2.8 101.8 1.0
OE1 D:GLU99 2.9 109.6 1.0
CG D:HIS77 3.4 101.8 1.0
CD D:GLU99 3.6 109.6 1.0
OE2 D:GLU99 3.8 109.6 1.0
CG D:GLU102 4.0 90.1 1.0
NE2 D:HIS77 4.0 101.8 1.0
CB D:HIS77 4.0 101.8 1.0
CG D:GLU11 4.1 63.2 1.0
MN D:MN202 4.1 160.3 1.0
CD2 D:HIS77 4.3 101.8 1.0
OD1 D:ASP8 4.4 57.2 1.0
CB D:GLU102 4.6 90.1 1.0
CA D:GLU99 4.9 109.6 1.0
CG D:GLU99 4.9 109.6 1.0
CB D:GLU11 5.0 63.2 1.0

Manganese binding site 4 out of 16 in 9c4d

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Manganese binding site 4 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mn202

b:160.3
occ:1.00
 OE2 D:GLU102 2.2 90.1 1.0
OD1 D:ASP8 2.2 57.2 1.0
OE2 D:GLU99 2.2 109.6 1.0
NE2 D:HIS103 2.4 92.5 1.0
CD D:GLU99 2.6 109.6 1.0
CG D:ASP8 2.7 57.2 1.0
OD2 D:ASP8 2.7 57.2 1.0
CG D:GLU99 3.0 109.6 1.0
CD D:GLU102 3.1 90.1 1.0
CE1 D:HIS103 3.2 92.5 1.0
O D:GLU99 3.3 109.6 1.0
CD2 D:HIS103 3.4 92.5 1.0
OE1 D:GLU99 3.4 109.6 1.0
CG D:GLU102 3.6 90.1 1.0
CB D:ASP8 4.0 57.2 1.0
OE1 D:GLU102 4.0 90.1 1.0
CA D:GLU99 4.0 109.6 1.0
CB D:GLU99 4.1 109.6 1.0
MN D:MN201 4.1 127.4 1.0
C D:GLU99 4.1 109.6 1.0
ND1 D:HIS103 4.3 92.5 1.0
CG D:HIS103 4.5 92.5 1.0
CA D:ASP8 4.7 57.2 1.0
OE1 D:GLU11 4.8 63.2 1.0

Manganese binding site 5 out of 16 in 9c4d

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Manganese binding site 5 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn201

b:149.1
occ:1.00
 OE1 E:GLU102 2.1 132.0 1.0
OE2 E:GLU11 2.2 85.0 1.0
ND1 E:HIS77 2.2 102.7 1.0
OE2 E:GLU102 2.3 132.0 1.0
CD E:GLU102 2.5 132.0 1.0
OE1 E:GLU11 2.6 85.0 1.0
CD E:GLU11 2.7 85.0 1.0
CE1 E:HIS77 2.8 102.7 1.0
OE1 E:GLU99 2.9 133.7 1.0
CG E:HIS77 3.4 102.7 1.0
CD E:GLU99 3.6 133.7 1.0
OE2 E:GLU99 3.8 133.7 1.0
CG E:GLU102 4.0 132.0 1.0
NE2 E:HIS77 4.0 102.7 1.0
CB E:HIS77 4.0 102.7 1.0
CG E:GLU11 4.1 85.0 1.0
MN E:MN202 4.1 168.5 1.0
CD2 E:HIS77 4.3 102.7 1.0
OD1 E:ASP8 4.4 97.6 1.0
CB E:GLU102 4.6 132.0 1.0
CA E:GLU99 4.9 133.7 1.0
CG E:GLU99 4.9 133.7 1.0
CB E:GLU11 5.0 85.0 1.0

Manganese binding site 6 out of 16 in 9c4d

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Manganese binding site 6 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mn202

b:168.5
occ:1.00
 OE2 E:GLU102 2.2 132.0 1.0
OD1 E:ASP8 2.2 97.6 1.0
OE2 E:GLU99 2.2 133.7 1.0
NE2 E:HIS103 2.4 133.6 1.0
CD E:GLU99 2.6 133.7 1.0
CG E:ASP8 2.7 97.6 1.0
OD2 E:ASP8 2.7 97.6 1.0
CG E:GLU99 3.0 133.7 1.0
CD E:GLU102 3.1 132.0 1.0
CE1 E:HIS103 3.2 133.6 1.0
O E:GLU99 3.3 133.7 1.0
CD2 E:HIS103 3.4 133.6 1.0
OE1 E:GLU99 3.4 133.7 1.0
CG E:GLU102 3.6 132.0 1.0
CB E:ASP8 4.0 97.6 1.0
OE1 E:GLU102 4.0 132.0 1.0
CA E:GLU99 4.0 133.7 1.0
CB E:GLU99 4.1 133.7 1.0
MN E:MN201 4.1 149.1 1.0
C E:GLU99 4.1 133.7 1.0
ND1 E:HIS103 4.3 133.6 1.0
CG E:HIS103 4.5 133.6 1.0
CA E:ASP8 4.7 97.6 1.0
OE1 E:GLU11 4.8 85.0 1.0

Manganese binding site 7 out of 16 in 9c4d

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Manganese binding site 7 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn201

b:157.2
occ:1.00
 OE1 F:GLU102 2.1 137.5 1.0
OE2 F:GLU11 2.2 127.4 1.0
ND1 F:HIS77 2.2 134.1 1.0
OE2 F:GLU102 2.3 137.5 1.0
CD F:GLU102 2.5 137.5 1.0
OE1 F:GLU11 2.6 127.4 1.0
CD F:GLU11 2.7 127.4 1.0
CE1 F:HIS77 2.8 134.1 1.0
OE1 F:GLU99 2.9 147.0 1.0
CG F:HIS77 3.4 134.1 1.0
CD F:GLU99 3.6 147.0 1.0
OE2 F:GLU99 3.8 147.0 1.0
CG F:GLU102 4.0 137.5 1.0
NE2 F:HIS77 4.0 134.1 1.0
CB F:HIS77 4.0 134.1 1.0
CG F:GLU11 4.1 127.4 1.0
MN F:MN202 4.1 198.9 1.0
CD2 F:HIS77 4.3 134.1 1.0
OD1 F:ASP8 4.4 127.0 1.0
CB F:GLU102 4.6 137.5 1.0
CA F:GLU99 4.9 147.0 1.0
CG F:GLU99 4.9 147.0 1.0
CB F:GLU11 5.0 127.4 1.0

Manganese binding site 8 out of 16 in 9c4d

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Manganese binding site 8 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mn202

b:198.9
occ:1.00
 OE2 F:GLU102 2.2 137.5 1.0
OD1 F:ASP8 2.2 127.0 1.0
OE2 F:GLU99 2.2 147.0 1.0
NE2 F:HIS103 2.4 143.8 1.0
CD F:GLU99 2.6 147.0 1.0
CG F:ASP8 2.7 127.0 1.0
OD2 F:ASP8 2.7 127.0 1.0
CG F:GLU99 3.0 147.0 1.0
CD F:GLU102 3.1 137.5 1.0
CE1 F:HIS103 3.2 143.8 1.0
O F:GLU99 3.3 147.0 1.0
CD2 F:HIS103 3.4 143.8 1.0
OE1 F:GLU99 3.4 147.0 1.0
CG F:GLU102 3.6 137.5 1.0
CB F:ASP8 4.0 127.0 1.0
OE1 F:GLU102 4.0 137.5 1.0
CA F:GLU99 4.0 147.0 1.0
CB F:GLU99 4.1 147.0 1.0
MN F:MN201 4.1 157.2 1.0
C F:GLU99 4.1 147.0 1.0
ND1 F:HIS103 4.3 143.8 1.0
CG F:HIS103 4.5 143.8 1.0
CA F:ASP8 4.7 127.0 1.0
OE1 F:GLU11 4.8 127.4 1.0

Manganese binding site 9 out of 16 in 9c4d

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Manganese binding site 9 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 9 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mn201

b:141.5
occ:1.00
 OE1 G:GLU102 2.1 93.5 1.0
OE2 G:GLU11 2.2 78.4 1.0
ND1 G:HIS77 2.2 105.6 1.0
OE2 G:GLU102 2.3 93.5 1.0
CD G:GLU102 2.5 93.5 1.0
OE1 G:GLU11 2.6 78.4 1.0
CD G:GLU11 2.7 78.4 1.0
CE1 G:HIS77 2.8 105.6 1.0
OE1 G:GLU99 2.9 106.2 1.0
CG G:HIS77 3.4 105.6 1.0
CD G:GLU99 3.6 106.2 1.0
OE2 G:GLU99 3.8 106.2 1.0
CG G:GLU102 4.0 93.5 1.0
NE2 G:HIS77 4.0 105.6 1.0
CB G:HIS77 4.0 105.6 1.0
CG G:GLU11 4.1 78.4 1.0
MN G:MN202 4.1 147.0 1.0
CD2 G:HIS77 4.3 105.6 1.0
OD1 G:ASP8 4.4 80.4 1.0
CB G:GLU102 4.6 93.5 1.0
CA G:GLU99 4.9 106.2 1.0
CG G:GLU99 4.9 106.2 1.0
CB G:GLU11 5.0 78.4 1.0

Manganese binding site 10 out of 16 in 9c4d

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Manganese binding site 10 out of 16 in the The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 10 of The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mn202

b:147.0
occ:1.00
 OE2 G:GLU102 2.2 93.5 1.0
OD1 G:ASP8 2.2 80.4 1.0
OE2 G:GLU99 2.2 106.2 1.0
NE2 G:HIS103 2.4 97.6 1.0
CD G:GLU99 2.6 106.2 1.0
CG G:ASP8 2.7 80.4 1.0
OD2 G:ASP8 2.7 80.4 1.0
CG G:GLU99 3.0 106.2 1.0
CD G:GLU102 3.1 93.5 1.0
CE1 G:HIS103 3.2 97.6 1.0
O G:GLU99 3.3 106.2 1.0
CD2 G:HIS103 3.4 97.6 1.0
OE1 G:GLU99 3.4 106.2 1.0
CG G:GLU102 3.6 93.5 1.0
CB G:ASP8 4.0 80.4 1.0
OE1 G:GLU102 4.0 93.5 1.0
CA G:GLU99 4.0 106.2 1.0
CB G:GLU99 4.1 106.2 1.0
MN G:MN201 4.1 141.5 1.0
C G:GLU99 4.1 106.2 1.0
ND1 G:HIS103 4.3 97.6 1.0
CG G:HIS103 4.5 97.6 1.0
CA G:ASP8 4.7 80.4 1.0
OE1 G:GLU11 4.8 78.4 1.0

Reference:

H.Shi, Y.Fu, A.Glasfeld, S.Ahuja. The Structure of 4 Mntr Homodimers Bound to the Promoter Sequence of Mnep. To Be Published.
Page generated: Sun Oct 6 14:13:59 2024

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