Manganese in PDB 9c4c: The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
Manganese Binding Sites:
The binding sites of Manganese atom in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
(pdb code 9c4c). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the
The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence, PDB code: 9c4c:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Manganese binding site 1 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 1 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn201
b:58.0
occ:1.00
|
OE1
|
E:GLU102
|
2.1
|
10.9
|
1.0
|
|
OE2
|
E:GLU11
|
2.1
|
26.4
|
1.0
|
|
OE2
|
E:GLU99
|
2.2
|
18.6
|
1.0
|
|
OE2
|
E:GLU102
|
2.2
|
28.4
|
1.0
|
|
ND1
|
E:HIS77
|
2.3
|
19.2
|
1.0
|
|
CD
|
E:GLU102
|
2.4
|
17.2
|
1.0
|
|
HE1
|
E:HIS77
|
2.8
|
13.9
|
1.0
|
|
CE1
|
E:HIS77
|
2.9
|
16.3
|
1.0
|
|
CD
|
E:GLU11
|
3.0
|
23.2
|
1.0
|
|
CD
|
E:GLU99
|
3.1
|
24.0
|
1.0
|
|
OE1
|
E:GLU11
|
3.1
|
19.1
|
1.0
|
|
OE1
|
E:GLU99
|
3.4
|
31.2
|
1.0
|
|
CG
|
E:HIS77
|
3.5
|
15.1
|
1.0
|
|
HB2
|
E:HIS77
|
3.6
|
14.3
|
1.0
|
|
MN
|
E:MN202
|
3.8
|
61.7
|
1.0
|
|
CG
|
E:GLU102
|
3.9
|
12.4
|
1.0
|
|
HA
|
E:GLU99
|
4.0
|
15.8
|
1.0
|
|
CB
|
E:HIS77
|
4.0
|
15.9
|
1.0
|
|
HG12
|
E:VAL98
|
4.1
|
13.6
|
1.0
|
|
NE2
|
E:HIS77
|
4.1
|
9.3
|
1.0
|
|
HG2
|
E:GLU99
|
4.3
|
17.0
|
1.0
|
|
HG2
|
E:GLU102
|
4.3
|
16.8
|
1.0
|
|
CG
|
E:GLU99
|
4.3
|
15.1
|
1.0
|
|
HG3
|
E:GLU102
|
4.4
|
15.2
|
1.0
|
|
CD2
|
E:HIS77
|
4.4
|
11.4
|
1.0
|
|
CG
|
E:GLU11
|
4.4
|
12.9
|
1.0
|
|
OD1
|
E:ASP8
|
4.5
|
37.7
|
1.0
|
|
HA
|
E:HIS77
|
4.5
|
12.0
|
1.0
|
|
HE1
|
E:MET15
|
4.6
|
17.8
|
1.0
|
|
HB3
|
E:GLU102
|
4.6
|
15.0
|
1.0
|
|
HG2
|
E:GLU11
|
4.6
|
18.7
|
1.0
|
|
HB2
|
E:GLU102
|
4.7
|
14.9
|
1.0
|
|
CB
|
E:GLU102
|
4.7
|
9.4
|
1.0
|
|
HB3
|
E:HIS77
|
4.8
|
14.4
|
1.0
|
|
HG3
|
E:GLU11
|
4.8
|
18.4
|
1.0
|
|
HE2
|
E:HIS77
|
4.8
|
12.4
|
1.0
|
|
CA
|
E:GLU99
|
4.9
|
8.4
|
1.0
|
|
CA
|
E:HIS77
|
4.9
|
6.4
|
1.0
|
|
HG3
|
E:GLU99
|
5.0
|
18.1
|
1.0
|
|
CG1
|
E:VAL98
|
5.0
|
5.2
|
1.0
|
|
HE2
|
E:MET15
|
5.0
|
18.6
|
1.0
|
|
Manganese binding site 2 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 2 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn202
b:61.7
occ:1.00
|
OE1
|
E:GLU99
|
2.1
|
31.2
|
1.0
|
|
OD1
|
E:ASP8
|
2.1
|
37.7
|
1.0
|
|
OD2
|
E:ASP8
|
2.2
|
41.1
|
1.0
|
|
NE2
|
E:HIS103
|
2.2
|
28.6
|
1.0
|
|
OE2
|
E:GLU102
|
2.2
|
28.4
|
1.0
|
|
CG
|
E:ASP8
|
2.5
|
39.7
|
1.0
|
|
CE1
|
E:HIS103
|
2.8
|
29.8
|
1.0
|
|
HE1
|
E:HIS103
|
2.9
|
26.2
|
1.0
|
|
CD
|
E:GLU99
|
3.2
|
24.0
|
1.0
|
|
CD2
|
E:HIS103
|
3.3
|
26.1
|
1.0
|
|
CD
|
E:GLU102
|
3.3
|
17.2
|
1.0
|
|
HD2
|
E:HIS103
|
3.6
|
24.4
|
1.0
|
|
HA
|
E:GLU99
|
3.6
|
15.8
|
1.0
|
|
HG2
|
E:GLU102
|
3.7
|
16.8
|
1.0
|
|
OE2
|
E:GLU99
|
3.8
|
18.6
|
1.0
|
|
HG3
|
E:GLU102
|
3.8
|
15.2
|
1.0
|
|
CG
|
E:GLU102
|
3.8
|
12.4
|
1.0
|
|
MN
|
E:MN201
|
3.8
|
58.0
|
1.0
|
|
HB3
|
E:GLU99
|
3.9
|
18.0
|
1.0
|
|
CB
|
E:ASP8
|
4.0
|
36.2
|
1.0
|
|
O
|
E:GLU99
|
4.0
|
20.0
|
1.0
|
|
ND1
|
E:HIS103
|
4.0
|
33.3
|
1.0
|
|
CG
|
E:HIS103
|
4.2
|
27.8
|
1.0
|
|
OE1
|
E:GLU11
|
4.3
|
19.1
|
1.0
|
|
CA
|
E:GLU99
|
4.3
|
8.4
|
1.0
|
|
CG
|
E:GLU99
|
4.3
|
15.1
|
1.0
|
|
CB
|
E:GLU99
|
4.3
|
14.2
|
1.0
|
|
HB3
|
E:ASP8
|
4.4
|
36.7
|
1.0
|
|
OE1
|
E:GLU102
|
4.4
|
10.9
|
1.0
|
|
HA
|
E:ASP8
|
4.4
|
36.8
|
1.0
|
|
HB2
|
E:ASP8
|
4.4
|
36.9
|
1.0
|
|
C
|
E:GLU99
|
4.6
|
15.0
|
1.0
|
|
HD1
|
E:HIS103
|
4.7
|
26.1
|
1.0
|
|
CA
|
E:ASP8
|
4.8
|
34.9
|
1.0
|
|
HG3
|
E:GLU99
|
4.8
|
18.1
|
1.0
|
|
OE2
|
E:GLU11
|
4.8
|
26.4
|
1.0
|
|
CD
|
E:GLU11
|
4.9
|
23.2
|
1.0
|
|
HB3
|
E:PRO4
|
5.0
|
36.6
|
1.0
|
|
Manganese binding site 3 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 3 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn201
b:56.5
occ:1.00
|
OE2
|
F:GLU102
|
2.1
|
21.5
|
1.0
|
|
OE2
|
F:GLU11
|
2.1
|
34.5
|
1.0
|
|
OE2
|
F:GLU99
|
2.1
|
19.7
|
1.0
|
|
OE1
|
F:GLU102
|
2.1
|
17.7
|
1.0
|
|
ND1
|
F:HIS77
|
2.2
|
11.2
|
1.0
|
|
CD
|
F:GLU102
|
2.4
|
17.2
|
1.0
|
|
HB2
|
F:HIS77
|
2.9
|
15.3
|
1.0
|
|
CD
|
F:GLU99
|
3.0
|
21.9
|
1.0
|
|
CE1
|
F:HIS77
|
3.1
|
16.0
|
1.0
|
|
CD
|
F:GLU11
|
3.1
|
22.5
|
1.0
|
|
CG
|
F:HIS77
|
3.1
|
13.3
|
1.0
|
|
HE1
|
F:HIS77
|
3.2
|
14.3
|
1.0
|
|
OE1
|
F:GLU11
|
3.4
|
24.9
|
1.0
|
|
OE1
|
F:GLU99
|
3.4
|
27.6
|
1.0
|
|
MN
|
F:MN202
|
3.4
|
49.1
|
1.0
|
|
CB
|
F:HIS77
|
3.5
|
15.2
|
1.0
|
|
HG13
|
F:VAL98
|
3.6
|
12.1
|
1.0
|
|
HA
|
F:HIS77
|
3.8
|
12.9
|
1.0
|
|
CG
|
F:GLU102
|
3.9
|
12.8
|
1.0
|
|
HA
|
F:GLU99
|
4.0
|
16.5
|
1.0
|
|
NE2
|
F:HIS77
|
4.1
|
19.3
|
1.0
|
|
CD2
|
F:HIS77
|
4.2
|
14.7
|
1.0
|
|
CA
|
F:HIS77
|
4.2
|
10.1
|
1.0
|
|
HG2
|
F:GLU99
|
4.2
|
17.3
|
1.0
|
|
HB3
|
F:HIS77
|
4.3
|
15.0
|
1.0
|
|
CG
|
F:GLU99
|
4.3
|
17.5
|
1.0
|
|
HG2
|
F:GLU102
|
4.3
|
14.2
|
1.0
|
|
HG3
|
F:GLU102
|
4.4
|
14.0
|
1.0
|
|
CG1
|
F:VAL98
|
4.4
|
6.1
|
1.0
|
|
CG
|
F:GLU11
|
4.5
|
14.1
|
1.0
|
|
HG12
|
F:VAL98
|
4.5
|
10.8
|
1.0
|
|
HB3
|
F:GLU102
|
4.6
|
12.7
|
1.0
|
|
HG11
|
F:VAL98
|
4.6
|
10.0
|
1.0
|
|
HG3
|
F:GLU11
|
4.6
|
18.2
|
1.0
|
|
CB
|
F:GLU102
|
4.7
|
8.7
|
1.0
|
|
HB2
|
F:GLU102
|
4.7
|
12.9
|
1.0
|
|
HG2
|
F:GLU11
|
4.8
|
18.4
|
1.0
|
|
CA
|
F:GLU99
|
4.8
|
13.8
|
1.0
|
|
HE2
|
F:HIS77
|
4.9
|
14.7
|
1.0
|
|
HG3
|
F:GLU99
|
4.9
|
17.1
|
1.0
|
|
H
|
F:HIS77
|
4.9
|
14.7
|
1.0
|
|
N
|
F:HIS77
|
5.0
|
12.7
|
1.0
|
|
Manganese binding site 4 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 4 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn202
b:49.1
occ:1.00
|
OE2
|
F:GLU102
|
2.1
|
21.5
|
1.0
|
|
OD1
|
F:ASP8
|
2.1
|
39.3
|
1.0
|
|
OE1
|
F:GLU99
|
2.2
|
27.6
|
1.0
|
|
OE1
|
F:GLU11
|
2.2
|
24.9
|
1.0
|
|
NE2
|
F:HIS103
|
2.4
|
22.8
|
1.0
|
|
HE1
|
F:HIS103
|
3.0
|
22.3
|
1.0
|
|
CE1
|
F:HIS103
|
3.0
|
23.4
|
1.0
|
|
CD
|
F:GLU99
|
3.2
|
21.9
|
1.0
|
|
CD
|
F:GLU11
|
3.2
|
22.5
|
1.0
|
|
CD
|
F:GLU102
|
3.3
|
17.2
|
1.0
|
|
CG
|
F:ASP8
|
3.4
|
32.7
|
1.0
|
|
MN
|
F:MN201
|
3.4
|
56.5
|
1.0
|
|
CD2
|
F:HIS103
|
3.5
|
27.6
|
1.0
|
|
OE2
|
F:GLU99
|
3.5
|
19.7
|
1.0
|
|
HA
|
F:ASP8
|
3.5
|
27.6
|
1.0
|
|
OE2
|
F:GLU11
|
3.6
|
34.5
|
1.0
|
|
HD2
|
F:HIS103
|
3.8
|
22.6
|
1.0
|
|
HG3
|
F:GLU102
|
4.0
|
14.0
|
1.0
|
|
HA
|
F:GLU99
|
4.1
|
16.5
|
1.0
|
|
HG2
|
F:GLU102
|
4.1
|
14.2
|
1.0
|
|
CG
|
F:GLU102
|
4.1
|
12.8
|
1.0
|
|
OD2
|
F:ASP8
|
4.2
|
31.4
|
1.0
|
|
ND1
|
F:HIS103
|
4.2
|
30.0
|
1.0
|
|
OE1
|
F:GLU102
|
4.3
|
17.7
|
1.0
|
|
CB
|
F:ASP8
|
4.3
|
26.8
|
1.0
|
|
CA
|
F:ASP8
|
4.3
|
23.4
|
1.0
|
|
HB3
|
F:GLU11
|
4.4
|
19.9
|
1.0
|
|
HB2
|
F:ASP8
|
4.4
|
27.8
|
1.0
|
|
CG
|
F:HIS103
|
4.4
|
31.4
|
1.0
|
|
HE21
|
F:GLN12
|
4.5
|
17.6
|
1.0
|
|
CG
|
F:GLU99
|
4.6
|
17.5
|
1.0
|
|
HB3
|
F:GLU99
|
4.6
|
16.4
|
1.0
|
|
CG
|
F:GLU11
|
4.6
|
14.1
|
1.0
|
|
HB2
|
F:GLU11
|
4.8
|
19.2
|
1.0
|
|
CB
|
F:GLU11
|
4.8
|
18.6
|
1.0
|
|
HH21
|
F:ARG76
|
4.8
|
13.6
|
1.0
|
|
CA
|
F:GLU99
|
4.9
|
13.8
|
1.0
|
|
CB
|
F:GLU99
|
4.9
|
14.0
|
1.0
|
|
HD1
|
F:HIS103
|
4.9
|
23.5
|
1.0
|
|
O
|
F:GLU99
|
4.9
|
18.5
|
1.0
|
|
HG3
|
F:GLU99
|
4.9
|
17.1
|
1.0
|
|
HG2
|
F:GLU11
|
5.0
|
18.4
|
1.0
|
|
Manganese binding site 5 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 5 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn201
b:53.3
occ:1.00
|
OE2
|
G:GLU102
|
2.2
|
22.8
|
1.0
|
|
OE1
|
G:GLU102
|
2.2
|
11.5
|
1.0
|
|
OE1
|
G:GLU99
|
2.2
|
16.6
|
1.0
|
|
OE2
|
G:GLU11
|
2.2
|
14.6
|
1.0
|
|
ND1
|
G:HIS77
|
2.3
|
14.4
|
1.0
|
|
CD
|
G:GLU102
|
2.5
|
13.9
|
1.0
|
|
HB2
|
G:HIS77
|
3.0
|
11.0
|
1.0
|
|
CD
|
G:GLU11
|
3.0
|
6.6
|
1.0
|
|
CE1
|
G:HIS77
|
3.1
|
14.6
|
1.0
|
|
OE1
|
G:GLU11
|
3.2
|
12.5
|
1.0
|
|
CG
|
G:HIS77
|
3.2
|
16.5
|
1.0
|
|
HE1
|
G:HIS77
|
3.3
|
11.6
|
1.0
|
|
CD
|
G:GLU99
|
3.3
|
21.4
|
1.0
|
|
MN
|
G:MN202
|
3.5
|
47.9
|
1.0
|
|
CB
|
G:HIS77
|
3.5
|
12.2
|
1.0
|
|
HA
|
G:GLU99
|
3.8
|
14.1
|
1.0
|
|
OE2
|
G:GLU99
|
3.9
|
25.2
|
1.0
|
|
HA
|
G:HIS77
|
3.9
|
10.0
|
1.0
|
|
CG
|
G:GLU102
|
4.0
|
5.3
|
1.0
|
|
NE2
|
G:HIS77
|
4.1
|
14.4
|
1.0
|
|
CD2
|
G:HIS77
|
4.2
|
10.9
|
1.0
|
|
HG2
|
G:GLU102
|
4.3
|
12.2
|
1.0
|
|
HG12
|
G:VAL98
|
4.3
|
15.3
|
1.0
|
|
HB3
|
G:HIS77
|
4.3
|
10.2
|
1.0
|
|
CA
|
G:HIS77
|
4.3
|
5.8
|
1.0
|
|
HG3
|
G:GLU102
|
4.4
|
10.9
|
1.0
|
|
HG2
|
G:GLU99
|
4.4
|
17.8
|
1.0
|
|
CG
|
G:GLU99
|
4.4
|
21.6
|
1.0
|
|
CG
|
G:GLU11
|
4.5
|
0.8
|
1.0
|
|
HE1
|
G:MET15
|
4.5
|
4.6
|
1.0
|
|
HB3
|
G:GLU102
|
4.6
|
11.1
|
1.0
|
|
CA
|
G:GLU99
|
4.7
|
8.7
|
1.0
|
|
HG3
|
G:GLU11
|
4.7
|
4.8
|
1.0
|
|
HE3
|
G:MET15
|
4.7
|
5.3
|
1.0
|
|
HB2
|
G:GLU102
|
4.7
|
9.7
|
1.0
|
|
HG21
|
G:VAL98
|
4.7
|
15.5
|
1.0
|
|
CB
|
G:GLU102
|
4.7
|
0.3
|
1.0
|
|
HG2
|
G:GLU11
|
4.8
|
4.9
|
1.0
|
|
HE2
|
G:HIS77
|
4.9
|
11.4
|
1.0
|
|
HB3
|
G:GLU99
|
5.0
|
13.9
|
1.0
|
|
CB
|
G:GLU99
|
5.0
|
9.9
|
1.0
|
|
Manganese binding site 6 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 6 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn202
b:47.9
occ:1.00
|
OE2
|
G:GLU102
|
2.1
|
22.8
|
1.0
|
|
OD1
|
G:ASP8
|
2.1
|
30.0
|
1.0
|
|
OE1
|
G:GLU11
|
2.2
|
12.5
|
1.0
|
|
NE2
|
G:HIS103
|
2.2
|
17.1
|
1.0
|
|
CE1
|
G:HIS103
|
3.0
|
13.3
|
1.0
|
|
HE1
|
G:HIS103
|
3.0
|
11.8
|
1.0
|
|
HA
|
G:ASP8
|
3.1
|
14.8
|
1.0
|
|
CD
|
G:GLU102
|
3.3
|
13.9
|
1.0
|
|
CD
|
G:GLU11
|
3.3
|
6.6
|
1.0
|
|
CD2
|
G:HIS103
|
3.3
|
16.3
|
1.0
|
|
CG
|
G:ASP8
|
3.4
|
22.7
|
1.0
|
|
MN
|
G:MN201
|
3.5
|
53.3
|
1.0
|
|
HD2
|
G:HIS103
|
3.6
|
12.1
|
1.0
|
|
OE1
|
G:GLU99
|
3.7
|
16.6
|
1.0
|
|
OE2
|
G:GLU11
|
3.8
|
14.6
|
1.0
|
|
HG3
|
G:GLU102
|
3.9
|
10.9
|
1.0
|
|
CA
|
G:ASP8
|
4.0
|
10.4
|
1.0
|
|
CG
|
G:GLU102
|
4.1
|
5.3
|
1.0
|
|
HB3
|
G:GLU11
|
4.1
|
8.6
|
1.0
|
|
ND1
|
G:HIS103
|
4.1
|
20.8
|
1.0
|
|
OE1
|
G:GLU102
|
4.2
|
11.5
|
1.0
|
|
OD2
|
G:ASP8
|
4.2
|
22.0
|
1.0
|
|
HG2
|
G:GLU102
|
4.2
|
12.2
|
1.0
|
|
CB
|
G:ASP8
|
4.3
|
13.5
|
1.0
|
|
CG
|
G:HIS103
|
4.3
|
18.9
|
1.0
|
|
HB2
|
G:GLU11
|
4.5
|
6.8
|
1.0
|
|
HA
|
G:GLU99
|
4.5
|
14.1
|
1.0
|
|
CD
|
G:GLU99
|
4.5
|
21.4
|
1.0
|
|
CG
|
G:GLU11
|
4.5
|
0.8
|
1.0
|
|
N
|
G:ASP8
|
4.6
|
19.5
|
1.0
|
|
CB
|
G:GLU11
|
4.6
|
2.5
|
1.0
|
|
HH21
|
G:ARG76
|
4.7
|
10.1
|
1.0
|
|
HE21
|
G:GLN12
|
4.8
|
4.2
|
1.0
|
|
HB2
|
G:ASP8
|
4.8
|
16.2
|
1.0
|
|
HD1
|
G:HIS103
|
4.8
|
13.8
|
1.0
|
|
HB3
|
G:GLU99
|
4.9
|
13.9
|
1.0
|
|
OE2
|
G:GLU99
|
4.9
|
25.2
|
1.0
|
|
H
|
G:ASP8
|
4.9
|
17.9
|
1.0
|
|
O
|
G:GLU7
|
4.9
|
9.7
|
1.0
|
|
O
|
G:GLU99
|
5.0
|
12.4
|
1.0
|
|
HB3
|
G:ASP8
|
5.0
|
15.6
|
1.0
|
|
Manganese binding site 7 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 7 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mn201
b:57.5
occ:1.00
|
OE1
|
H:GLU102
|
2.2
|
38.8
|
1.0
|
|
OE2
|
H:GLU99
|
2.2
|
46.1
|
1.0
|
|
OE2
|
H:GLU11
|
2.2
|
50.2
|
1.0
|
|
OE1
|
H:GLU11
|
2.2
|
55.4
|
1.0
|
|
OE2
|
H:GLU102
|
2.2
|
42.0
|
1.0
|
|
ND1
|
H:HIS77
|
2.4
|
47.7
|
1.0
|
|
CD
|
H:GLU11
|
2.5
|
56.3
|
1.0
|
|
CD
|
H:GLU102
|
2.5
|
38.5
|
1.0
|
|
CE1
|
H:HIS77
|
3.1
|
43.8
|
1.0
|
|
CD
|
H:GLU99
|
3.2
|
46.1
|
1.0
|
|
HB2
|
H:HIS77
|
3.2
|
40.7
|
1.0
|
|
HE1
|
H:HIS77
|
3.2
|
40.7
|
1.0
|
|
CG
|
H:HIS77
|
3.4
|
41.8
|
1.0
|
|
OE1
|
H:GLU99
|
3.7
|
46.9
|
1.0
|
|
CB
|
H:HIS77
|
3.8
|
39.7
|
1.0
|
|
MN
|
H:MN202
|
3.9
|
92.3
|
1.0
|
|
CG
|
H:GLU11
|
4.0
|
53.5
|
1.0
|
|
CG
|
H:GLU102
|
4.0
|
35.2
|
1.0
|
|
NE2
|
H:HIS77
|
4.2
|
39.4
|
1.0
|
|
OD2
|
H:ASP8
|
4.2
|
53.0
|
1.0
|
|
HG3
|
H:GLU11
|
4.3
|
51.8
|
1.0
|
|
HG2
|
H:GLU99
|
4.3
|
42.4
|
1.0
|
|
HA
|
H:GLU99
|
4.3
|
41.7
|
1.0
|
|
CD2
|
H:HIS77
|
4.3
|
38.6
|
1.0
|
|
HG2
|
H:GLU102
|
4.4
|
35.4
|
1.0
|
|
CG
|
H:GLU99
|
4.4
|
44.2
|
1.0
|
|
HG2
|
H:GLU11
|
4.4
|
51.8
|
1.0
|
|
HG3
|
H:GLU102
|
4.4
|
35.3
|
1.0
|
|
HB3
|
H:HIS77
|
4.4
|
41.0
|
1.0
|
|
HG13
|
H:VAL98
|
4.5
|
34.5
|
1.0
|
|
HA
|
H:HIS77
|
4.6
|
40.0
|
1.0
|
|
HB2
|
H:GLU102
|
4.7
|
35.6
|
1.0
|
|
HE2
|
H:MET15
|
4.7
|
62.0
|
1.0
|
|
HB3
|
H:GLU102
|
4.7
|
36.3
|
1.0
|
|
CB
|
H:GLU102
|
4.8
|
37.9
|
1.0
|
|
HB3
|
H:GLU11
|
4.8
|
51.4
|
1.0
|
|
HB2
|
H:GLU11
|
4.8
|
51.7
|
1.0
|
|
CA
|
H:HIS77
|
4.8
|
36.4
|
1.0
|
|
HE2
|
H:TYR95
|
4.9
|
50.9
|
1.0
|
|
CB
|
H:GLU11
|
4.9
|
52.4
|
1.0
|
|
HE2
|
H:HIS77
|
4.9
|
39.9
|
1.0
|
|
HG3
|
H:GLU99
|
5.0
|
43.0
|
1.0
|
|
Manganese binding site 8 out
of 8 in 9c4c
Go back to
Manganese Binding Sites List in 9c4c
Manganese binding site 8 out
of 8 in the The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mn202
b:92.3
occ:1.00
|
OD2
|
H:ASP8
|
1.7
|
53.0
|
1.0
|
|
OE1
|
H:GLU99
|
2.2
|
46.9
|
1.0
|
|
OD1
|
H:ASP8
|
2.2
|
50.7
|
1.0
|
|
OE2
|
H:GLU102
|
2.2
|
42.0
|
1.0
|
|
CG
|
H:ASP8
|
2.2
|
53.3
|
1.0
|
|
NE2
|
H:HIS103
|
2.3
|
43.1
|
1.0
|
|
HE1
|
H:HIS103
|
2.7
|
40.2
|
1.0
|
|
CE1
|
H:HIS103
|
2.8
|
41.8
|
1.0
|
|
CD
|
H:GLU99
|
3.2
|
46.1
|
1.0
|
|
CD
|
H:GLU102
|
3.3
|
38.5
|
1.0
|
|
CD2
|
H:HIS103
|
3.5
|
41.3
|
1.0
|
|
OE2
|
H:GLU99
|
3.6
|
46.1
|
1.0
|
|
CB
|
H:ASP8
|
3.7
|
53.2
|
1.0
|
|
HG2
|
H:GLU102
|
3.7
|
35.4
|
1.0
|
|
HG3
|
H:GLU102
|
3.7
|
35.3
|
1.0
|
|
OE1
|
H:GLU11
|
3.8
|
55.4
|
1.0
|
|
MN
|
H:MN201
|
3.9
|
57.5
|
1.0
|
|
CG
|
H:GLU102
|
3.9
|
35.2
|
1.0
|
|
HD2
|
H:HIS103
|
3.9
|
39.7
|
1.0
|
|
HA
|
H:GLU99
|
3.9
|
41.7
|
1.0
|
|
ND1
|
H:HIS103
|
4.0
|
42.3
|
1.0
|
|
HA
|
H:ASP8
|
4.0
|
51.5
|
1.0
|
|
HB3
|
H:ASP8
|
4.1
|
51.5
|
1.0
|
|
HB3
|
H:GLU99
|
4.1
|
43.4
|
1.0
|
|
O
|
H:GLU99
|
4.2
|
42.3
|
1.0
|
|
HB2
|
H:ASP8
|
4.2
|
51.3
|
1.0
|
|
CG
|
H:HIS103
|
4.3
|
40.4
|
1.0
|
|
OE1
|
H:GLU102
|
4.4
|
38.8
|
1.0
|
|
CA
|
H:ASP8
|
4.4
|
54.8
|
1.0
|
|
CG
|
H:GLU99
|
4.5
|
44.2
|
1.0
|
|
CB
|
H:GLU99
|
4.6
|
46.5
|
1.0
|
|
HD1
|
H:HIS103
|
4.6
|
39.6
|
1.0
|
|
CA
|
H:GLU99
|
4.6
|
41.3
|
1.0
|
|
H
|
H:ASP8
|
4.7
|
50.5
|
1.0
|
|
N
|
H:ASP8
|
4.8
|
50.5
|
1.0
|
|
CD
|
H:GLU11
|
4.8
|
56.3
|
1.0
|
|
C
|
H:GLU99
|
4.9
|
41.0
|
1.0
|
|
HG3
|
H:GLU99
|
4.9
|
43.0
|
1.0
|
|
Reference:
H.Shi,
Y.Fu,
A.Glasfeld,
S.Ahuja.
The Structure of Two Mntr Dimers Bound to the Native Mnep Promoter Sequence. To Be Published.
Page generated: Sun Oct 6 14:13:59 2024
|
