Manganese in PDB 9asc: Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

Enzymatic activity of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

All present enzymatic activity of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope:
2.4.2.53;

Manganese Binding Sites:

The binding sites of Manganese atom in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope (pdb code 9asc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope, PDB code: 9asc:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 9asc

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Manganese Binding Sites List in 9asc

Manganese binding site 1 out of 4 in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn402 b:83.7 occ:1.00	O2B	A:UDP401	2.0	59.1	1.0
	OD2	A:ASP102	2.1	63.7	1.0
	OE1	A:GLN104	2.1	67.4	1.0
	O2A	A:UDP401	2.2	61.5	1.0
	O1B	A:UDP401	2.4	59.4	1.0
	PB	A:UDP401	2.5	64.2	1.0
	HE	A:ARG205	2.6	68.9	1.0
	O3A	A:UDP401	3.1	53.5	1.0
	PA	A:UDP401	3.1	62.8	1.0
	HH21	A:ARG205	3.1	69.1	1.0
	CG	A:ASP102	3.3	67.6	1.0
	CD	A:GLN104	3.3	71.3	1.0
	NE	A:ARG205	3.5	66.9	1.0
	HG	A:SER210	3.6	68.1	1.0
	HB3	A:ARG205	3.7	69.3	1.0
	O5'	A:UDP401	3.8	57.6	1.0
	HB3	A:ASP102	3.8	63.5	1.0
	NH2	A:ARG205	3.9	70.4	1.0
	HB2	A:ASP102	3.9	63.7	1.0
	HG3	A:GLN104	3.9	68.1	1.0
	CB	A:ASP102	3.9	63.0	1.0
	O3B	A:UDP401	4.0	55.5	1.0
	H5'2	A:UDP401	4.1	54.7	1.0
	HE22	A:GLN104	4.1	68.1	1.0
	NE2	A:GLN104	4.2	70.2	1.0
	CZ	A:ARG205	4.2	70.2	1.0
	CG	A:GLN104	4.2	69.5	1.0
	HD2	A:ARG205	4.2	69.2	1.0
	OD1	A:ASP102	4.2	71.0	1.0
	HA	A:SER210	4.4	68.0	1.0
	OG	A:SER210	4.4	68.2	1.0
	CD	A:ARG205	4.5	68.0	1.0
	O1A	A:UDP401	4.5	61.4	1.0
	C5'	A:UDP401	4.5	53.9	1.0
	HB2	A:SER210	4.5	68.3	1.0
	CB	A:ARG205	4.5	70.3	1.0
	HH22	A:ARG205	4.6	69.2	1.0
	HB2	A:ARG205	4.7	69.3	1.0
	HB2	A:GLN104	4.8	67.2	1.0
	HG2	A:GLN104	4.9	68.0	1.0
	CB	A:SER210	4.9	70.7	1.0
	H3'	A:UDP401	4.9	56.0	1.0
	HE21	A:GLN104	5.0	68.0	1.0

Manganese binding site 2 out of 4 in 9asc

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Manganese Binding Sites List in 9asc

Manganese binding site 2 out of 4 in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mn402 b:83.7 occ:1.00	O2B	B:UDP401	2.0	59.1	1.0
	OD2	B:ASP102	2.1	63.7	1.0
	OE1	B:GLN104	2.1	67.4	1.0
	O2A	B:UDP401	2.2	61.5	1.0
	O1B	B:UDP401	2.4	59.4	1.0
	PB	B:UDP401	2.5	64.2	1.0
	HE	B:ARG205	2.6	68.9	1.0
	O3A	B:UDP401	3.1	53.5	1.0
	PA	B:UDP401	3.1	62.8	1.0
	HH21	B:ARG205	3.1	69.1	1.0
	CG	B:ASP102	3.3	67.6	1.0
	CD	B:GLN104	3.3	71.3	1.0
	NE	B:ARG205	3.5	66.9	1.0
	HG	B:SER210	3.6	68.1	1.0
	HB3	B:ARG205	3.7	69.3	1.0
	O5'	B:UDP401	3.8	57.6	1.0
	HB3	B:ASP102	3.8	63.5	1.0
	NH2	B:ARG205	3.9	70.4	1.0
	HB2	B:ASP102	3.9	63.7	1.0
	HG3	B:GLN104	3.9	68.1	1.0
	CB	B:ASP102	3.9	63.0	1.0
	O3B	B:UDP401	4.0	55.5	1.0
	H5'2	B:UDP401	4.1	54.7	1.0
	HE22	B:GLN104	4.1	68.1	1.0
	NE2	B:GLN104	4.2	70.2	1.0
	CZ	B:ARG205	4.2	70.2	1.0
	CG	B:GLN104	4.2	69.5	1.0
	HD2	B:ARG205	4.2	69.2	1.0
	OD1	B:ASP102	4.2	71.0	1.0
	HA	B:SER210	4.4	68.0	1.0
	OG	B:SER210	4.4	68.2	1.0
	CD	B:ARG205	4.5	68.0	1.0
	O1A	B:UDP401	4.5	61.4	1.0
	C5'	B:UDP401	4.5	53.9	1.0
	HB2	B:SER210	4.5	68.3	1.0
	CB	B:ARG205	4.5	70.3	1.0
	HH22	B:ARG205	4.6	69.2	1.0
	HB2	B:ARG205	4.7	69.3	1.0
	HB2	B:GLN104	4.8	67.2	1.0
	HG2	B:GLN104	4.9	68.0	1.0
	CB	B:SER210	4.9	70.7	1.0
	H3'	B:UDP401	4.9	56.0	1.0
	HE21	B:GLN104	5.0	68.0	1.0

Manganese binding site 3 out of 4 in 9asc

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Manganese Binding Sites List in 9asc

Manganese binding site 3 out of 4 in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mn402 b:83.7 occ:1.00	O2B	C:UDP401	2.0	59.1	1.0
	OD2	C:ASP102	2.1	63.7	1.0
	OE1	C:GLN104	2.1	67.4	1.0
	O2A	C:UDP401	2.2	61.5	1.0
	O1B	C:UDP401	2.4	59.4	1.0
	PB	C:UDP401	2.5	64.2	1.0
	HE	C:ARG205	2.6	68.9	1.0
	O3A	C:UDP401	3.1	53.5	1.0
	PA	C:UDP401	3.1	62.8	1.0
	HH21	C:ARG205	3.1	69.1	1.0
	CG	C:ASP102	3.3	67.6	1.0
	CD	C:GLN104	3.3	71.3	1.0
	NE	C:ARG205	3.5	66.9	1.0
	HG	C:SER210	3.6	68.1	1.0
	HB3	C:ARG205	3.7	69.3	1.0
	O5'	C:UDP401	3.8	57.6	1.0
	HB3	C:ASP102	3.8	63.5	1.0
	NH2	C:ARG205	3.9	70.4	1.0
	HB2	C:ASP102	3.9	63.7	1.0
	HG3	C:GLN104	3.9	68.1	1.0
	CB	C:ASP102	3.9	63.0	1.0
	O3B	C:UDP401	4.0	55.5	1.0
	H5'2	C:UDP401	4.1	54.7	1.0
	HE22	C:GLN104	4.1	68.1	1.0
	NE2	C:GLN104	4.2	70.2	1.0
	CZ	C:ARG205	4.2	70.2	1.0
	CG	C:GLN104	4.2	69.5	1.0
	HD2	C:ARG205	4.2	69.2	1.0
	OD1	C:ASP102	4.2	71.0	1.0
	HA	C:SER210	4.4	68.0	1.0
	OG	C:SER210	4.5	68.2	1.0
	CD	C:ARG205	4.5	68.0	1.0
	O1A	C:UDP401	4.5	61.4	1.0
	C5'	C:UDP401	4.5	53.9	1.0
	HB2	C:SER210	4.5	68.3	1.0
	CB	C:ARG205	4.5	70.3	1.0
	HH22	C:ARG205	4.6	69.2	1.0
	HB2	C:ARG205	4.7	69.3	1.0
	HB2	C:GLN104	4.8	67.2	1.0
	HG2	C:GLN104	4.9	68.0	1.0
	CB	C:SER210	4.9	70.7	1.0
	H3'	C:UDP401	4.9	56.0	1.0
	HE21	C:GLN104	5.0	68.0	1.0

Manganese binding site 4 out of 4 in 9asc

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Manganese Binding Sites List in 9asc

Manganese binding site 4 out of 4 in the Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Cryo-Em Structure of the Glycosyltransferase Arnc From Salmonella Enterica in the Udp-Bound State Determined on Talos Arctica Microscope within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mn402 b:83.7 occ:1.00	O2B	D:UDP401	2.0	59.1	1.0
	OD2	D:ASP102	2.1	63.7	1.0
	OE1	D:GLN104	2.1	67.4	1.0
	O2A	D:UDP401	2.2	61.5	1.0
	O1B	D:UDP401	2.4	59.4	1.0
	PB	D:UDP401	2.5	64.2	1.0
	HE	D:ARG205	2.6	68.9	1.0
	O3A	D:UDP401	3.1	53.5	1.0
	PA	D:UDP401	3.1	62.8	1.0
	HH21	D:ARG205	3.1	69.1	1.0
	CG	D:ASP102	3.3	67.6	1.0
	CD	D:GLN104	3.3	71.3	1.0
	NE	D:ARG205	3.5	66.9	1.0
	HG	D:SER210	3.6	68.1	1.0
	HB3	D:ARG205	3.7	69.3	1.0
	O5'	D:UDP401	3.8	57.6	1.0
	HB3	D:ASP102	3.8	63.5	1.0
	NH2	D:ARG205	3.9	70.4	1.0
	HB2	D:ASP102	3.9	63.7	1.0
	HG3	D:GLN104	3.9	68.1	1.0
	CB	D:ASP102	3.9	63.0	1.0
	O3B	D:UDP401	4.0	55.5	1.0
	H5'2	D:UDP401	4.1	54.7	1.0
	HE22	D:GLN104	4.1	68.1	1.0
	NE2	D:GLN104	4.2	70.2	1.0
	CZ	D:ARG205	4.2	70.2	1.0
	CG	D:GLN104	4.2	69.5	1.0
	HD2	D:ARG205	4.2	69.2	1.0
	OD1	D:ASP102	4.2	71.0	1.0
	HA	D:SER210	4.4	68.0	1.0
	OG	D:SER210	4.4	68.2	1.0
	CD	D:ARG205	4.5	68.0	1.0
	O1A	D:UDP401	4.5	61.4	1.0
	C5'	D:UDP401	4.5	53.9	1.0
	HB2	D:SER210	4.5	68.3	1.0
	CB	D:ARG205	4.5	70.3	1.0
	HH22	D:ARG205	4.6	69.2	1.0
	HB2	D:ARG205	4.7	69.3	1.0
	HB2	D:GLN104	4.8	67.2	1.0
	HG2	D:GLN104	4.9	68.0	1.0
	CB	D:SER210	4.9	70.7	1.0
	H3'	D:UDP401	4.9	56.0	1.0
	HE21	D:GLN104	5.0	68.0	1.0

Reference:

K.U.Ashraf, M.Bunoro-Batista, T.B.Ansell, A.Punetha, S.Rosario-Garrido, E.Firlar, J.T.Kaelber, P.J.Stansfeld, V.I.Petrou. Structure and Mechanism of the Polyprenyl Phosphate Glycosyltransferase Arnc Participating in Aminoarabinose Biosynthesis in Gram-Negative Bacteria To Be Published.

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