Manganese in PDB 8ydm: Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus

The structure of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus also contains other interesting chemical elements:

Magnesium	(Mg)	24 atoms
Iron	(Fe)	4 atoms

The binding sites of Manganese atom in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus (pdb code 8ydm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus, PDB code: 8ydm:

Manganese binding site 1 out of 1 in the Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Cryo-Em Structure of Carc-Lh Complex From Chloroflexus Aurantiacus within 5.0Å range: probe atom residue distance (Å) B Occ M:Mn404 b:27.0 occ:1.00 OE2 M:GLU224 1.7 58.1 1.0 NE2 L:HIS230 2.1 50.8 1.0 OE1 M:GLU224 2.2 56.3 1.0 CD M:GLU224 2.2 53.5 1.0 CE1 L:HIS230 2.5 49.2 1.0 NE2 L:HIS267 2.6 60.8 1.0 NE2 M:HIS256 2.7 53.4 1.0 NE2 M:HIS209 2.8 48.0 1.0 CE1 L:HIS267 3.3 56.0 1.0 CD2 L:HIS230 3.4 53.8 1.0 CE1 M:HIS209 3.6 42.3 1.0 CE1 M:HIS256 3.6 45.5 1.0 CG M:GLU224 3.7 50.4 1.0 CD2 L:HIS267 3.7 51.5 1.0 CD2 M:HIS256 3.8 44.9 1.0 ND1 L:HIS230 3.8 58.2 1.0 CD2 M:HIS209 3.9 45.2 1.0 CG L:HIS230 4.2 55.5 1.0 CG1 L:ILE234 4.4 50.1 1.0 ND1 L:HIS267 4.5 54.8 1.0 CD1 L:ILE234 4.6 43.7 1.0 CB M:GLU224 4.6 52.0 1.0 CG L:HIS267 4.7 49.8 1.0 ND1 M:HIS256 4.8 45.7 1.0 ND1 M:HIS209 4.8 47.4 1.0 CG M:HIS256 4.9 44.5 1.0 CG1 M:ILE213 4.9 48.5 1.0 CG M:HIS209 5.0 47.8 1.0

G.Huang, S.Dong, L.Ma, L.Li, J.Ju, M.J.Wang, J.P.Zhang, S.F.Sui, X.Qin. Cryo-Em Structure of A Minimal Reaction Center-Light-Harvesting Complex From the Phototrophic Bacterium Chloroflexus Aurantiacus. J Integr Plant Biol 2025.
ISSN: ESSN 1744-7909
PubMed: 39912559
DOI: 10.1111/JIPB.13853