Manganese in PDB 8xjx: Structure of the Argonaute Protein From Kurthia Massiliensis in Complex with Guide Dna and 19-Mer Target Dna

The binding sites of Manganese atom in the Structure of the Argonaute Protein From Kurthia Massiliensis in Complex with Guide Dna and 19-Mer Target Dna (pdb code 8xjx). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Structure of the Argonaute Protein From Kurthia Massiliensis in Complex with Guide Dna and 19-Mer Target Dna, PDB code: 8xjx:

Manganese binding site 1 out of 1 in the Structure of the Argonaute Protein From Kurthia Massiliensis in Complex with Guide Dna and 19-Mer Target Dna


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of the Argonaute Protein From Kurthia Massiliensis in Complex with Guide Dna and 19-Mer Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn801 b:55.8 occ:1.00 OXT A:VAL737 1.7 38.8 1.0 OP1 B:DA3 1.8 40.9 1.0 C A:VAL737 2.5 38.8 1.0 OP2 B:DT1 2.6 44.0 1.0 O A:VAL737 2.7 38.8 1.0 P B:DA3 3.2 40.9 1.0 O A:HOH912 3.4 24.5 1.0 O3' B:DG2 3.7 40.9 1.0 P B:DT1 3.7 44.0 1.0 CG1 A:VAL737 3.8 38.8 1.0 CA A:VAL737 3.9 38.8 1.0 OP3 B:DT1 3.9 20.0 1.0 OE1 A:GLN450 3.9 40.9 1.0 C5' B:DA3 4.0 40.9 1.0 NZ A:LYS506 4.1 40.9 1.0 O5' B:DA3 4.1 40.9 1.0 O B:HOH103 4.1 47.1 1.0 C5' B:DT1 4.2 44.0 1.0 OP2 B:DA3 4.3 40.9 1.0 CB A:VAL737 4.3 38.8 1.0 NE2 A:GLN450 4.3 40.9 1.0 O A:HOH911 4.5 29.7 1.0 O5' B:DT1 4.5 44.0 1.0 O B:HOH101 4.5 35.1 1.0 CD A:GLN450 4.5 40.9 1.0 OP1 B:DT1 4.8 44.0 1.0 N A:VAL737 5.0 38.8 1.0

X.Tao, H.Ding, S.Wu, F.Wang, H.Xu, J.Li, C.Zhai, S.Li, K.Chen, S.Wu, Y.Liu, L.Ma. Structural and Mechanistic Insights Into A Mesophilic Prokaryotic Argonaute Nucleic Acids Res. V. 52 11895 2024.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKAE820