Manganese in PDB 8umc: Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em

The binding sites of Manganese atom in the Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em (pdb code 8umc). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em, PDB code: 8umc:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn401 b:52.7 occ:1.00 OE1 A:GLU295 2.1 45.3 1.0 ND1 A:HIS259 2.2 36.6 1.0 OD1 A:ASP175 2.4 41.3 1.0 OE2 A:GLU143 2.9 42.7 1.0 CD A:GLU295 3.1 41.7 1.0 CG A:HIS259 3.1 35.6 1.0 CE1 A:HIS259 3.2 37.0 1.0 CB A:HIS259 3.3 35.9 1.0 OE2 A:GLU295 3.4 45.8 1.0 CG A:ASP175 3.5 39.5 1.0 CD A:GLU143 3.9 42.5 1.0 CD2 A:HIS259 4.3 35.3 1.0 NE2 A:HIS259 4.3 37.4 1.0 OE1 A:GLU143 4.3 43.9 1.0 OD2 A:ASP175 4.3 40.6 1.0 NZ A:LYS261 4.4 40.3 1.0 CB A:ASP175 4.4 35.6 1.0 CE A:LYS261 4.4 38.3 1.0 CG A:GLU295 4.4 38.1 1.0 CA A:HIS259 4.8 32.1 1.0

Manganese binding site 2 out of 2 in the Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Deinococcus Aerius TR0125 C-Glucosyl Deglycosidase (Cgd), Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ C:Mn401 b:52.2 occ:1.00 OE2 C:GLU295 2.1 44.5 1.0 ND1 C:HIS259 2.3 35.5 1.0 OE2 C:GLU143 2.8 43.4 1.0 OD1 C:ASP175 3.0 39.4 1.0 CD C:GLU295 3.2 39.3 1.0 CG C:HIS259 3.2 34.9 1.0 CB C:HIS259 3.3 35.9 1.0 CE1 C:HIS259 3.4 37.6 1.0 OE1 C:GLU295 3.6 42.9 1.0 CG C:ASP175 3.7 38.6 1.0 NZ C:LYS261 3.9 41.6 1.0 CD C:GLU143 4.1 44.7 1.0 OD2 C:ASP175 4.2 42.5 1.0 CE C:LYS261 4.3 40.4 1.0 CD2 C:HIS259 4.4 37.4 1.0 CB C:ASP175 4.5 36.1 1.0 CG C:GLU295 4.5 37.3 1.0 NE2 C:HIS259 4.5 39.1 1.0 CG C:GLU143 4.8 42.5 1.0 CA C:HIS259 4.8 31.9 1.0 OE1 C:GLU143 5.0 47.4 1.0

V.Furlanetto, D.C.Kalyani, A.Kostelac, J.Puc, D.Haltrich, B.M.Hallberg, C.Divne. Structural and Functional Characterization of A Gene Cluster Responsible For Deglycosylation of C-Glucosyl Flavonoids and Xanthonoids By Deinococcus Aerius. J.Mol.Biol. V. 436 68547 2024.
ISSN: ESSN 1089-8638
PubMed: 38508304
DOI: 10.1016/J.JMB.2024.168547