Manganese in PDB 8ui1: X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3

All present enzymatic activity of X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3:
2.4.1.41;

The structure of X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3, PDB code: 8ui1 was solved by P.Kumar, N.L.Samara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.68 / 2.91
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.43, 65.713, 166.314, 90, 90, 90
R / Rfree (%)	18.5 / 22.7

The binding sites of Manganese atom in the X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3 (pdb code 8ui1). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3, PDB code: 8ui1:

Manganese binding site 1 out of 1 in the X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of X-Ray Crystal Structure of Toxoplasma Gondii Galnac-T3 at pH 7.3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn702 b:56.2 occ:1.00 NE2 A:HIS414 2.1 46.7 1.0 O1A A:UDP701 2.2 76.7 1.0 OD2 A:ASP276 2.2 60.6 1.0 O A:HOH808 2.2 81.5 1.0 O A:HOH805 2.2 67.5 1.0 H2 A:HOH808 2.2 97.8 1.0 NE2 A:HIS278 2.3 69.3 1.0 HE1 A:HIS414 2.6 75.3 1.0 CE1 A:HIS414 2.7 62.8 1.0 H2 A:HOH805 2.7 81.0 1.0 H1 A:HOH805 2.9 81.0 1.0 H1 A:HOH808 3.0 97.8 1.0 CE1 A:HIS278 3.2 69.2 1.0 H5'1 A:UDP701 3.3 75.7 0.4 CD2 A:HIS278 3.3 48.4 1.0 HE1 A:HIS278 3.3 82.9 1.0 CG A:ASP276 3.4 65.3 1.0 CD2 A:HIS414 3.4 48.7 1.0 HD2 A:HIS278 3.5 58.0 1.0 H3' A:UDP701 3.6 78.4 0.5 PA A:UDP701 3.6 83.9 0.4 HD2 A:HIS414 3.8 58.4 1.0 ND1 A:HIS414 4.0 45.5 1.0 HB3 A:ASP276 4.0 64.5 1.0 O A:HOH811 4.1 56.8 1.0 O3B A:UDP701 4.1 79.3 0.4 OD1 A:ASP276 4.1 86.3 1.0 C5' A:UDP701 4.2 63.1 0.5 CB A:ASP276 4.3 53.8 1.0 HH21 A:ARG417 4.3 129.2 1.0 CG A:HIS414 4.3 45.2 1.0 ND1 A:HIS278 4.4 61.8 1.0 H2 A:HOH811 4.4 68.1 1.0 O5' A:UDP701 4.4 71.4 1.0 H1 A:HOH811 4.4 68.1 1.0 CG A:HIS278 4.4 47.0 1.0 O1B A:UDP701 4.5 59.6 1.0 O3A A:UDP701 4.5 89.9 0.4 O2A A:UDP701 4.5 69.3 0.5 C3' A:UDP701 4.5 65.4 0.5 PB A:UDP701 4.6 82.0 0.2 HB2 A:ASP276 4.6 64.5 1.0 HD1 A:HIS414 4.6 54.5 1.0 C4' A:UDP701 4.8 65.2 0.5 H5'2 A:UDP701 4.8 75.7 0.4 NH2 A:ARG417 4.9 107.7 1.0 O A:ILE415 5.0 63.8 1.0 H4' A:UDP701 5.0 78.2 0.4

P.Kumar, T.Tomita, T.A.Gerken, C.J.Ballard, Y.S.Lee, L.M.Weiss, N.L.Samara. A Toxoplasma Gondii O-Glycosyltransferase That Modulates Bradyzoite Cyst Wall Rigidity Is Distinct From Host Homologues Nat Commun V. 15 3792 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-48253-W