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Manganese in PDB 8tow: Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex

Other elements in 8tow:

The structure of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex also contains other interesting chemical elements:

Iron (Fe) 6 atoms
Magnesium (Mg) 70 atoms
Calcium (Ca) 8 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex (pdb code 8tow). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex, PDB code: 8tow:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 8tow

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Manganese binding site 1 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN1 A:OEX401 0.0 8.3 1.0
OE2 A:GLU189 1.9 6.6 1.0
NE2 A:HIS332 2.0 7.1 1.0
OD2 A:ASP342 2.0 12.8 1.0
O3 A:OEX401 2.1 8.3 1.0
O1 A:OEX401 2.4 8.3 1.0
CE1 A:HIS332 2.6 7.1 1.0
O5 A:OEX401 2.7 8.3 1.0
CG A:ASP342 3.0 12.8 1.0
CD A:GLU189 3.0 6.6 1.0
MN2 A:OEX401 3.1 8.3 1.0
CD2 A:HIS332 3.2 7.1 1.0
OD1 A:ASP342 3.3 12.8 1.0
MN3 A:OEX401 3.5 8.3 1.0
CA1 A:OEX401 3.8 8.3 1.0
ND1 A:HIS332 3.8 7.1 1.0
OE1 A:GLU189 3.8 6.6 1.0
NE2 A:HIS337 3.9 8.8 1.0
CG A:GLU189 3.9 6.6 1.0
OE2 A:GLU329 4.0 6.5 1.0
O2 A:OEX401 4.0 8.3 1.0
CG A:HIS332 4.1 7.1 1.0
OE1 A:GLU333 4.1 9.2 1.0
CB A:ASP342 4.3 12.8 1.0
O A:HOH580 4.3 11.7 1.0
O A:HOH568 4.4 5.0 1.0
OE1 C:GLU341 4.5 8.4 1.0
CG1 A:VAL185 4.5 3.5 1.0
CD A:GLU329 4.6 6.5 1.0
CE1 A:HIS337 4.6 8.8 1.0
OE1 A:GLU329 4.6 6.5 1.0
CD A:GLU333 4.6 9.2 1.0
OE2 A:GLU333 4.8 9.2 1.0
OE2 C:GLU341 4.8 8.4 1.0
CD2 A:HIS337 4.9 8.8 1.0
O A:HOH573 4.9 7.4 1.0

Manganese binding site 2 out of 8 in 8tow

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Manganese binding site 2 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN2 A:OEX401 0.0 8.3 1.0
OD1 A:ASP342 1.8 12.8 1.0
O2 A:OEX401 2.0 8.3 1.0
OE1 C:GLU341 2.1 8.4 1.0
O3 A:OEX401 2.3 8.3 1.0
O1 A:OEX401 2.5 8.3 1.0
CG A:ASP342 2.8 12.8 1.0
MN3 A:OEX401 2.9 8.3 1.0
C A:ALA344 3.0 11.2 0.5
CD C:GLU341 3.0 8.4 1.0
MN1 A:OEX401 3.1 8.3 1.0
OD2 A:ASP342 3.2 12.8 1.0
OE2 C:GLU341 3.4 8.4 1.0
CA1 A:OEX401 3.5 8.3 1.0
O A:ALA344 3.7 11.2 0.5
CA A:ALA344 3.7 11.2 0.5
O A:ALA344 3.8 11.2 0.5
O A:HOH548 3.9 8.5 1.0
C A:ALA344 4.0 11.2 0.5
O5 A:OEX401 4.0 8.3 1.0
N A:ALA344 4.1 11.2 0.5
CA A:ALA344 4.1 11.2 0.5
O A:HOH580 4.1 11.7 1.0
NE2 A:HIS337 4.2 8.8 1.0
N A:ALA344 4.2 11.2 0.5
CB A:ASP342 4.2 12.8 1.0
CG C:GLU341 4.4 8.4 1.0
CD2 A:HIS337 4.4 8.8 1.0
OE2 A:GLU170 4.5 5.5 1.0
OE1 A:GLU333 4.5 9.2 1.0
OE2 A:GLU189 4.6 6.6 1.0
CA A:ASP342 4.6 12.8 1.0
C A:ASP342 4.6 12.8 1.0
O4 A:OEX401 4.6 8.3 1.0
NE2 A:HIS332 4.7 7.1 1.0
CB C:GLU341 4.7 8.4 1.0
C A:LEU343 4.7 10.5 0.5
O A:LEU343 4.9 10.5 0.5
NH2 C:ARG344 4.9 5.3 1.0
CB A:ALA344 4.9 11.2 0.5
NH1 C:ARG344 5.0 5.3 1.0

Manganese binding site 3 out of 8 in 8tow

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Manganese binding site 3 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN3 A:OEX401 0.0 8.3 1.0
O2 A:OEX401 1.9 8.3 1.0
O4 A:OEX401 1.9 8.3 1.0
OE1 A:GLU333 2.1 9.2 1.0
OE2 C:GLU341 2.1 8.4 1.0
O3 A:OEX401 2.3 8.3 1.0
O5 A:OEX401 2.6 8.3 1.0
MN2 A:OEX401 2.9 8.3 1.0
CD C:GLU341 3.0 8.4 1.0
CD A:GLU333 3.0 9.2 1.0
MN4 A:OEX401 3.1 8.3 1.0
OE1 C:GLU341 3.2 8.4 1.0
OE2 A:GLU333 3.4 9.2 1.0
CA1 A:OEX401 3.5 8.3 1.0
MN1 A:OEX401 3.5 8.3 1.0
OE2 A:GLU170 3.6 5.5 1.0
O C:HOH637 3.8 10.8 1.0
NH2 C:ARG344 3.8 5.3 1.0
O1 A:OEX401 3.8 8.3 1.0
OE1 A:GLU170 3.9 5.5 1.0
CD A:GLU170 4.1 5.5 1.0
NE2 A:HIS332 4.2 7.1 1.0
CG C:GLU341 4.3 8.4 1.0
CG A:GLU333 4.4 9.2 1.0
O A:HOH554 4.4 9.6 1.0
NE2 A:HIS337 4.5 8.8 1.0
OD1 A:ASP342 4.5 12.8 1.0
CD2 A:HIS332 4.7 7.1 1.0
OE2 A:GLU189 4.7 6.6 1.0
CZ C:ARG344 4.7 5.3 1.0
CB A:GLU333 4.8 9.2 1.0
O A:HOH520 4.8 7.8 1.0
OD2 A:ASP342 4.8 12.8 1.0
O A:ALA344 4.9 11.2 0.5
C A:ALA344 4.9 11.2 0.5
NH1 C:ARG344 5.0 5.3 1.0
O A:ALA344 5.0 11.2 0.5

Manganese binding site 4 out of 8 in 8tow

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Manganese binding site 4 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN4 A:OEX401 0.0 8.3 1.0
OE1 A:GLU170 2.0 5.5 1.0
O4 A:OEX401 2.0 8.3 1.0
OE2 A:GLU333 2.1 9.2 1.0
O5 A:OEX401 2.4 8.3 1.0
O A:HOH520 2.6 7.8 1.0
O A:HOH582 2.7 13.6 1.0
CD A:GLU333 3.0 9.2 1.0
CD A:GLU170 3.0 5.5 1.0
MN3 A:OEX401 3.1 8.3 1.0
O A:HOH583 3.1 8.7 1.0
OE1 A:GLU333 3.2 9.2 1.0
OE2 A:GLU170 3.4 5.5 1.0
O A:HOH554 3.8 9.6 1.0
CA1 A:OEX401 3.9 8.3 1.0
O2 A:OEX401 4.2 8.3 1.0
CG A:GLU170 4.3 5.5 1.0
CG A:GLU333 4.3 9.2 1.0
O A:HOH545 4.4 5.2 1.0
O A:HOH584 4.5 7.3 1.0
O A:SER169 4.7 4.4 1.0
NH2 C:ARG344 4.7 5.3 1.0
CA A:GLU170 4.7 5.5 1.0
O3 A:OEX401 4.8 8.3 1.0
O D:HOH589 4.8 10.7 1.0
CG1 A:VAL185 4.8 3.5 1.0
CB A:GLU170 4.8 5.5 1.0
OE2 C:GLU341 4.9 8.4 1.0
O A:HOH569 5.0 9.1 1.0

Manganese binding site 5 out of 8 in 8tow

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Manganese binding site 5 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN1 a:OEX401 0.0 8.3 1.0
OE2 a:GLU189 1.9 6.6 1.0
NE2 a:HIS332 2.0 7.1 1.0
OD2 a:ASP342 2.0 12.8 1.0
O3 a:OEX401 2.1 8.3 1.0
O1 a:OEX401 2.4 8.3 1.0
CE1 a:HIS332 2.6 7.1 1.0
O5 a:OEX401 2.7 8.3 1.0
CG a:ASP342 3.0 12.8 1.0
CD a:GLU189 3.0 6.6 1.0
MN2 a:OEX401 3.1 8.3 1.0
CD2 a:HIS332 3.2 7.1 1.0
OD1 a:ASP342 3.3 12.8 1.0
MN3 a:OEX401 3.5 8.3 1.0
CA1 a:OEX401 3.8 8.3 1.0
ND1 a:HIS332 3.8 7.1 1.0
OE1 a:GLU189 3.8 6.6 1.0
NE2 a:HIS337 3.9 8.8 1.0
CG a:GLU189 3.9 6.6 1.0
OE2 a:GLU329 4.0 6.5 1.0
O2 a:OEX401 4.0 8.3 1.0
CG a:HIS332 4.1 7.1 1.0
OE1 a:GLU333 4.1 9.2 1.0
CB a:ASP342 4.3 12.8 1.0
O a:HOH580 4.3 11.7 1.0
O a:HOH568 4.4 5.0 1.0
OE1 c:GLU341 4.5 8.4 1.0
CG1 a:VAL185 4.5 3.5 1.0
CD a:GLU329 4.6 6.5 1.0
CE1 a:HIS337 4.6 8.8 1.0
OE1 a:GLU329 4.6 6.5 1.0
CD a:GLU333 4.6 9.2 1.0
OE2 a:GLU333 4.8 9.2 1.0
OE2 c:GLU341 4.8 8.4 1.0
CD2 a:HIS337 4.9 8.8 1.0
O a:HOH573 4.9 7.4 1.0

Manganese binding site 6 out of 8 in 8tow

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Manganese binding site 6 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN2 a:OEX401 0.0 8.3 1.0
OD1 a:ASP342 1.8 12.8 1.0
O2 a:OEX401 2.0 8.3 1.0
OE1 c:GLU341 2.1 8.4 1.0
O3 a:OEX401 2.3 8.3 1.0
O1 a:OEX401 2.5 8.3 1.0
CG a:ASP342 2.8 12.8 1.0
MN3 a:OEX401 2.9 8.3 1.0
C a:ALA344 3.0 11.2 0.5
CD c:GLU341 3.0 8.4 1.0
MN1 a:OEX401 3.1 8.3 1.0
OD2 a:ASP342 3.2 12.8 1.0
OE2 c:GLU341 3.4 8.4 1.0
CA1 a:OEX401 3.5 8.3 1.0
O a:ALA344 3.7 11.2 0.5
CA a:ALA344 3.7 11.2 0.5
O a:ALA344 3.8 11.2 0.5
O a:HOH548 3.9 8.5 1.0
C a:ALA344 4.0 11.2 0.5
O5 a:OEX401 4.0 8.3 1.0
N a:ALA344 4.1 11.2 0.5
CA a:ALA344 4.1 11.2 0.5
O a:HOH580 4.1 11.7 1.0
NE2 a:HIS337 4.2 8.8 1.0
N a:ALA344 4.2 11.2 0.5
CB a:ASP342 4.2 12.8 1.0
CG c:GLU341 4.4 8.4 1.0
CD2 a:HIS337 4.4 8.8 1.0
OE2 a:GLU170 4.5 5.5 1.0
OE1 a:GLU333 4.5 9.2 1.0
OE2 a:GLU189 4.6 6.6 1.0
CA a:ASP342 4.6 12.8 1.0
C a:ASP342 4.6 12.8 1.0
O4 a:OEX401 4.6 8.3 1.0
NE2 a:HIS332 4.7 7.1 1.0
CB c:GLU341 4.7 8.4 1.0
C a:LEU343 4.7 10.5 0.5
O a:LEU343 4.9 10.5 0.5
NH2 c:ARG344 4.9 5.3 1.0
CB a:ALA344 4.9 11.2 0.5
NH1 c:ARG344 5.0 5.3 1.0

Manganese binding site 7 out of 8 in 8tow

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Manganese binding site 7 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


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Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN3 a:OEX401 0.0 8.3 1.0
O2 a:OEX401 1.9 8.3 1.0
O4 a:OEX401 1.9 8.3 1.0
OE1 a:GLU333 2.1 9.2 1.0
OE2 c:GLU341 2.1 8.4 1.0
O3 a:OEX401 2.3 8.3 1.0
O5 a:OEX401 2.6 8.3 1.0
MN2 a:OEX401 2.9 8.3 1.0
CD c:GLU341 3.0 8.4 1.0
CD a:GLU333 3.0 9.2 1.0
MN4 a:OEX401 3.1 8.3 1.0
OE1 c:GLU341 3.2 8.4 1.0
OE2 a:GLU333 3.4 9.2 1.0
CA1 a:OEX401 3.5 8.3 1.0
MN1 a:OEX401 3.5 8.3 1.0
OE2 a:GLU170 3.6 5.5 1.0
O c:HOH637 3.8 10.8 1.0
NH2 c:ARG344 3.8 5.3 1.0
O1 a:OEX401 3.8 8.3 1.0
OE1 a:GLU170 3.9 5.5 1.0
CD a:GLU170 4.1 5.5 1.0
NE2 a:HIS332 4.2 7.1 1.0
CG c:GLU341 4.3 8.4 1.0
CG a:GLU333 4.4 9.2 1.0
O a:HOH554 4.4 9.6 1.0
NE2 a:HIS337 4.5 8.8 1.0
OD1 a:ASP342 4.5 12.8 1.0
CD2 a:HIS332 4.7 7.1 1.0
OE2 a:GLU189 4.7 6.6 1.0
CZ c:ARG344 4.7 5.3 1.0
CB a:GLU333 4.8 9.2 1.0
O a:HOH520 4.8 7.8 1.0
OD2 a:ASP342 4.8 12.8 1.0
O a:ALA344 4.9 11.2 0.5
C a:ALA344 4.9 11.2 0.5
NH1 c:ARG344 5.0 5.3 1.0
O a:ALA344 5.0 11.2 0.5

Manganese binding site 8 out of 8 in 8tow

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Manganese binding site 8 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN4 a:OEX401 0.0 8.3 1.0
OE1 a:GLU170 2.0 5.5 1.0
O4 a:OEX401 2.0 8.3 1.0
OE2 a:GLU333 2.1 9.2 1.0
O5 a:OEX401 2.4 8.3 1.0
O a:HOH520 2.6 7.8 1.0
O a:HOH582 2.7 13.6 1.0
CD a:GLU333 3.0 9.2 1.0
CD a:GLU170 3.0 5.5 1.0
MN3 a:OEX401 3.1 8.3 1.0
O a:HOH583 3.1 8.7 1.0
OE1 a:GLU333 3.2 9.2 1.0
OE2 a:GLU170 3.4 5.5 1.0
O a:HOH554 3.8 9.6 1.0
CA1 a:OEX401 3.9 8.3 1.0
O2 a:OEX401 4.2 8.3 1.0
CG a:GLU170 4.3 5.5 1.0
CG a:GLU333 4.3 9.2 1.0
O a:HOH545 4.4 5.2 1.0
O a:HOH584 4.5 7.3 1.0
O a:SER169 4.7 4.4 1.0
NH2 c:ARG344 4.7 5.3 1.0
CA a:GLU170 4.7 5.5 1.0
O3 a:OEX401 4.8 8.3 1.0
O d:HOH589 4.8 10.7 1.0
CG1 a:VAL185 4.8 3.5 1.0
CB a:GLU170 4.8 5.5 1.0
OE2 c:GLU341 4.9 8.4 1.0
O a:HOH569 5.0 9.1 1.0

Reference:

D.A.Flesher, G.W.Brudvig. Mutation-Induced Shift of the Photosystem II Active Site Reveals Insight Into Conserved Water Channels To Be Published.
Page generated: Sun Oct 6 13:57:32 2024

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