Atomistry » Manganese » PDB 8sne-8v22 » 8tow
Atomistry »
  Manganese »
    PDB 8sne-8v22 »
      8tow »

Manganese in PDB 8tow: Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex

Other elements in 8tow:

The structure of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex also contains other interesting chemical elements:

Iron (Fe) 6 atoms
Magnesium (Mg) 70 atoms
Calcium (Ca) 8 atoms
Chlorine (Cl) 4 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex (pdb code 8tow). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 8 binding sites of Manganese where determined in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex, PDB code: 8tow:
Jump to Manganese binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Manganese binding site 1 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 1 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN1 A:OEX401 0.0 8.3 1.0
OE2 A:GLU189 1.9 6.6 1.0
NE2 A:HIS332 2.0 7.1 1.0
OD2 A:ASP342 2.0 12.8 1.0
O3 A:OEX401 2.1 8.3 1.0
O1 A:OEX401 2.4 8.3 1.0
CE1 A:HIS332 2.6 7.1 1.0
O5 A:OEX401 2.7 8.3 1.0
CG A:ASP342 3.0 12.8 1.0
CD A:GLU189 3.0 6.6 1.0
MN2 A:OEX401 3.1 8.3 1.0
CD2 A:HIS332 3.2 7.1 1.0
OD1 A:ASP342 3.3 12.8 1.0
MN3 A:OEX401 3.5 8.3 1.0
CA1 A:OEX401 3.8 8.3 1.0
ND1 A:HIS332 3.8 7.1 1.0
OE1 A:GLU189 3.8 6.6 1.0
NE2 A:HIS337 3.9 8.8 1.0
CG A:GLU189 3.9 6.6 1.0
OE2 A:GLU329 4.0 6.5 1.0
O2 A:OEX401 4.0 8.3 1.0
CG A:HIS332 4.1 7.1 1.0
OE1 A:GLU333 4.1 9.2 1.0
CB A:ASP342 4.3 12.8 1.0
O A:HOH580 4.3 11.7 1.0
O A:HOH568 4.4 5.0 1.0
OE1 C:GLU341 4.5 8.4 1.0
CG1 A:VAL185 4.5 3.5 1.0
CD A:GLU329 4.6 6.5 1.0
CE1 A:HIS337 4.6 8.8 1.0
OE1 A:GLU329 4.6 6.5 1.0
CD A:GLU333 4.6 9.2 1.0
OE2 A:GLU333 4.8 9.2 1.0
OE2 C:GLU341 4.8 8.4 1.0
CD2 A:HIS337 4.9 8.8 1.0
O A:HOH573 4.9 7.4 1.0

Manganese binding site 2 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 2 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN2 A:OEX401 0.0 8.3 1.0
OD1 A:ASP342 1.8 12.8 1.0
O2 A:OEX401 2.0 8.3 1.0
OE1 C:GLU341 2.1 8.4 1.0
O3 A:OEX401 2.3 8.3 1.0
O1 A:OEX401 2.5 8.3 1.0
CG A:ASP342 2.8 12.8 1.0
MN3 A:OEX401 2.9 8.3 1.0
C A:ALA344 3.0 11.2 0.5
CD C:GLU341 3.0 8.4 1.0
MN1 A:OEX401 3.1 8.3 1.0
OD2 A:ASP342 3.2 12.8 1.0
OE2 C:GLU341 3.4 8.4 1.0
CA1 A:OEX401 3.5 8.3 1.0
O A:ALA344 3.7 11.2 0.5
CA A:ALA344 3.7 11.2 0.5
O A:ALA344 3.8 11.2 0.5
O A:HOH548 3.9 8.5 1.0
C A:ALA344 4.0 11.2 0.5
O5 A:OEX401 4.0 8.3 1.0
N A:ALA344 4.1 11.2 0.5
CA A:ALA344 4.1 11.2 0.5
O A:HOH580 4.1 11.7 1.0
NE2 A:HIS337 4.2 8.8 1.0
N A:ALA344 4.2 11.2 0.5
CB A:ASP342 4.2 12.8 1.0
CG C:GLU341 4.4 8.4 1.0
CD2 A:HIS337 4.4 8.8 1.0
OE2 A:GLU170 4.5 5.5 1.0
OE1 A:GLU333 4.5 9.2 1.0
OE2 A:GLU189 4.6 6.6 1.0
CA A:ASP342 4.6 12.8 1.0
C A:ASP342 4.6 12.8 1.0
O4 A:OEX401 4.6 8.3 1.0
NE2 A:HIS332 4.7 7.1 1.0
CB C:GLU341 4.7 8.4 1.0
C A:LEU343 4.7 10.5 0.5
O A:LEU343 4.9 10.5 0.5
NH2 C:ARG344 4.9 5.3 1.0
CB A:ALA344 4.9 11.2 0.5
NH1 C:ARG344 5.0 5.3 1.0

Manganese binding site 3 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 3 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN3 A:OEX401 0.0 8.3 1.0
O2 A:OEX401 1.9 8.3 1.0
O4 A:OEX401 1.9 8.3 1.0
OE1 A:GLU333 2.1 9.2 1.0
OE2 C:GLU341 2.1 8.4 1.0
O3 A:OEX401 2.3 8.3 1.0
O5 A:OEX401 2.6 8.3 1.0
MN2 A:OEX401 2.9 8.3 1.0
CD C:GLU341 3.0 8.4 1.0
CD A:GLU333 3.0 9.2 1.0
MN4 A:OEX401 3.1 8.3 1.0
OE1 C:GLU341 3.2 8.4 1.0
OE2 A:GLU333 3.4 9.2 1.0
CA1 A:OEX401 3.5 8.3 1.0
MN1 A:OEX401 3.5 8.3 1.0
OE2 A:GLU170 3.6 5.5 1.0
O C:HOH637 3.8 10.8 1.0
NH2 C:ARG344 3.8 5.3 1.0
O1 A:OEX401 3.8 8.3 1.0
OE1 A:GLU170 3.9 5.5 1.0
CD A:GLU170 4.1 5.5 1.0
NE2 A:HIS332 4.2 7.1 1.0
CG C:GLU341 4.3 8.4 1.0
CG A:GLU333 4.4 9.2 1.0
O A:HOH554 4.4 9.6 1.0
NE2 A:HIS337 4.5 8.8 1.0
OD1 A:ASP342 4.5 12.8 1.0
CD2 A:HIS332 4.7 7.1 1.0
OE2 A:GLU189 4.7 6.6 1.0
CZ C:ARG344 4.7 5.3 1.0
CB A:GLU333 4.8 9.2 1.0
O A:HOH520 4.8 7.8 1.0
OD2 A:ASP342 4.8 12.8 1.0
O A:ALA344 4.9 11.2 0.5
C A:ALA344 4.9 11.2 0.5
NH1 C:ARG344 5.0 5.3 1.0
O A:ALA344 5.0 11.2 0.5

Manganese binding site 4 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 4 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn401

b:8.3
occ:1.00
 MN4 A:OEX401 0.0 8.3 1.0
OE1 A:GLU170 2.0 5.5 1.0
O4 A:OEX401 2.0 8.3 1.0
OE2 A:GLU333 2.1 9.2 1.0
O5 A:OEX401 2.4 8.3 1.0
O A:HOH520 2.6 7.8 1.0
O A:HOH582 2.7 13.6 1.0
CD A:GLU333 3.0 9.2 1.0
CD A:GLU170 3.0 5.5 1.0
MN3 A:OEX401 3.1 8.3 1.0
O A:HOH583 3.1 8.7 1.0
OE1 A:GLU333 3.2 9.2 1.0
OE2 A:GLU170 3.4 5.5 1.0
O A:HOH554 3.8 9.6 1.0
CA1 A:OEX401 3.9 8.3 1.0
O2 A:OEX401 4.2 8.3 1.0
CG A:GLU170 4.3 5.5 1.0
CG A:GLU333 4.3 9.2 1.0
O A:HOH545 4.4 5.2 1.0
O A:HOH584 4.5 7.3 1.0
O A:SER169 4.7 4.4 1.0
NH2 C:ARG344 4.7 5.3 1.0
CA A:GLU170 4.7 5.5 1.0
O3 A:OEX401 4.8 8.3 1.0
O D:HOH589 4.8 10.7 1.0
CG1 A:VAL185 4.8 3.5 1.0
CB A:GLU170 4.8 5.5 1.0
OE2 C:GLU341 4.9 8.4 1.0
O A:HOH569 5.0 9.1 1.0

Manganese binding site 5 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 5 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 5 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN1 a:OEX401 0.0 8.3 1.0
OE2 a:GLU189 1.9 6.6 1.0
NE2 a:HIS332 2.0 7.1 1.0
OD2 a:ASP342 2.0 12.8 1.0
O3 a:OEX401 2.1 8.3 1.0
O1 a:OEX401 2.4 8.3 1.0
CE1 a:HIS332 2.6 7.1 1.0
O5 a:OEX401 2.7 8.3 1.0
CG a:ASP342 3.0 12.8 1.0
CD a:GLU189 3.0 6.6 1.0
MN2 a:OEX401 3.1 8.3 1.0
CD2 a:HIS332 3.2 7.1 1.0
OD1 a:ASP342 3.3 12.8 1.0
MN3 a:OEX401 3.5 8.3 1.0
CA1 a:OEX401 3.8 8.3 1.0
ND1 a:HIS332 3.8 7.1 1.0
OE1 a:GLU189 3.8 6.6 1.0
NE2 a:HIS337 3.9 8.8 1.0
CG a:GLU189 3.9 6.6 1.0
OE2 a:GLU329 4.0 6.5 1.0
O2 a:OEX401 4.0 8.3 1.0
CG a:HIS332 4.1 7.1 1.0
OE1 a:GLU333 4.1 9.2 1.0
CB a:ASP342 4.3 12.8 1.0
O a:HOH580 4.3 11.7 1.0
O a:HOH568 4.4 5.0 1.0
OE1 c:GLU341 4.5 8.4 1.0
CG1 a:VAL185 4.5 3.5 1.0
CD a:GLU329 4.6 6.5 1.0
CE1 a:HIS337 4.6 8.8 1.0
OE1 a:GLU329 4.6 6.5 1.0
CD a:GLU333 4.6 9.2 1.0
OE2 a:GLU333 4.8 9.2 1.0
OE2 c:GLU341 4.8 8.4 1.0
CD2 a:HIS337 4.9 8.8 1.0
O a:HOH573 4.9 7.4 1.0

Manganese binding site 6 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 6 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 6 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN2 a:OEX401 0.0 8.3 1.0
OD1 a:ASP342 1.8 12.8 1.0
O2 a:OEX401 2.0 8.3 1.0
OE1 c:GLU341 2.1 8.4 1.0
O3 a:OEX401 2.3 8.3 1.0
O1 a:OEX401 2.5 8.3 1.0
CG a:ASP342 2.8 12.8 1.0
MN3 a:OEX401 2.9 8.3 1.0
C a:ALA344 3.0 11.2 0.5
CD c:GLU341 3.0 8.4 1.0
MN1 a:OEX401 3.1 8.3 1.0
OD2 a:ASP342 3.2 12.8 1.0
OE2 c:GLU341 3.4 8.4 1.0
CA1 a:OEX401 3.5 8.3 1.0
O a:ALA344 3.7 11.2 0.5
CA a:ALA344 3.7 11.2 0.5
O a:ALA344 3.8 11.2 0.5
O a:HOH548 3.9 8.5 1.0
C a:ALA344 4.0 11.2 0.5
O5 a:OEX401 4.0 8.3 1.0
N a:ALA344 4.1 11.2 0.5
CA a:ALA344 4.1 11.2 0.5
O a:HOH580 4.1 11.7 1.0
NE2 a:HIS337 4.2 8.8 1.0
N a:ALA344 4.2 11.2 0.5
CB a:ASP342 4.2 12.8 1.0
CG c:GLU341 4.4 8.4 1.0
CD2 a:HIS337 4.4 8.8 1.0
OE2 a:GLU170 4.5 5.5 1.0
OE1 a:GLU333 4.5 9.2 1.0
OE2 a:GLU189 4.6 6.6 1.0
CA a:ASP342 4.6 12.8 1.0
C a:ASP342 4.6 12.8 1.0
O4 a:OEX401 4.6 8.3 1.0
NE2 a:HIS332 4.7 7.1 1.0
CB c:GLU341 4.7 8.4 1.0
C a:LEU343 4.7 10.5 0.5
O a:LEU343 4.9 10.5 0.5
NH2 c:ARG344 4.9 5.3 1.0
CB a:ALA344 4.9 11.2 0.5
NH1 c:ARG344 5.0 5.3 1.0

Manganese binding site 7 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 7 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 7 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN3 a:OEX401 0.0 8.3 1.0
O2 a:OEX401 1.9 8.3 1.0
O4 a:OEX401 1.9 8.3 1.0
OE1 a:GLU333 2.1 9.2 1.0
OE2 c:GLU341 2.1 8.4 1.0
O3 a:OEX401 2.3 8.3 1.0
O5 a:OEX401 2.6 8.3 1.0
MN2 a:OEX401 2.9 8.3 1.0
CD c:GLU341 3.0 8.4 1.0
CD a:GLU333 3.0 9.2 1.0
MN4 a:OEX401 3.1 8.3 1.0
OE1 c:GLU341 3.2 8.4 1.0
OE2 a:GLU333 3.4 9.2 1.0
CA1 a:OEX401 3.5 8.3 1.0
MN1 a:OEX401 3.5 8.3 1.0
OE2 a:GLU170 3.6 5.5 1.0
O c:HOH637 3.8 10.8 1.0
NH2 c:ARG344 3.8 5.3 1.0
O1 a:OEX401 3.8 8.3 1.0
OE1 a:GLU170 3.9 5.5 1.0
CD a:GLU170 4.1 5.5 1.0
NE2 a:HIS332 4.2 7.1 1.0
CG c:GLU341 4.3 8.4 1.0
CG a:GLU333 4.4 9.2 1.0
O a:HOH554 4.4 9.6 1.0
NE2 a:HIS337 4.5 8.8 1.0
OD1 a:ASP342 4.5 12.8 1.0
CD2 a:HIS332 4.7 7.1 1.0
OE2 a:GLU189 4.7 6.6 1.0
CZ c:ARG344 4.7 5.3 1.0
CB a:GLU333 4.8 9.2 1.0
O a:HOH520 4.8 7.8 1.0
OD2 a:ASP342 4.8 12.8 1.0
O a:ALA344 4.9 11.2 0.5
C a:ALA344 4.9 11.2 0.5
NH1 c:ARG344 5.0 5.3 1.0
O a:ALA344 5.0 11.2 0.5

Manganese binding site 8 out of 8 in 8tow

Go back to Manganese Binding Sites List in 8tow
Manganese binding site 8 out of 8 in the Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 8 of Structure of A Mutated Photosystem II Complex Reveals Perturbation of the Oxygen-Evolving Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mn401

b:8.3
occ:1.00
 MN4 a:OEX401 0.0 8.3 1.0
OE1 a:GLU170 2.0 5.5 1.0
O4 a:OEX401 2.0 8.3 1.0
OE2 a:GLU333 2.1 9.2 1.0
O5 a:OEX401 2.4 8.3 1.0
O a:HOH520 2.6 7.8 1.0
O a:HOH582 2.7 13.6 1.0
CD a:GLU333 3.0 9.2 1.0
CD a:GLU170 3.0 5.5 1.0
MN3 a:OEX401 3.1 8.3 1.0
O a:HOH583 3.1 8.7 1.0
OE1 a:GLU333 3.2 9.2 1.0
OE2 a:GLU170 3.4 5.5 1.0
O a:HOH554 3.8 9.6 1.0
CA1 a:OEX401 3.9 8.3 1.0
O2 a:OEX401 4.2 8.3 1.0
CG a:GLU170 4.3 5.5 1.0
CG a:GLU333 4.3 9.2 1.0
O a:HOH545 4.4 5.2 1.0
O a:HOH584 4.5 7.3 1.0
O a:SER169 4.7 4.4 1.0
NH2 c:ARG344 4.7 5.3 1.0
CA a:GLU170 4.7 5.5 1.0
O3 a:OEX401 4.8 8.3 1.0
O d:HOH589 4.8 10.7 1.0
CG1 a:VAL185 4.8 3.5 1.0
CB a:GLU170 4.8 5.5 1.0
OE2 c:GLU341 4.9 8.4 1.0
O a:HOH569 5.0 9.1 1.0

Reference:

D.A.Flesher, G.W.Brudvig. Mutation-Induced Shift of the Photosystem II Active Site Reveals Insight Into Conserved Water Channels To Be Published.
Page generated: Sun Oct 6 13:57:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy