Manganese in PDB 8slm: Crystal Structure of Deinococcus Geothermalis Ppri

The structure of Crystal Structure of Deinococcus Geothermalis Ppri, PDB code: 8slm was solved by Y.Zhao, H.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.33 / 2.81
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	120.77, 120.77, 100.66, 90, 90, 120
R / Rfree (%)	24.7 / 28.4

The binding sites of Manganese atom in the Crystal Structure of Deinococcus Geothermalis Ppri (pdb code 8slm). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Deinococcus Geothermalis Ppri, PDB code: 8slm:

Manganese binding site 1 out of 1 in the Crystal Structure of Deinococcus Geothermalis Ppri


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Deinococcus Geothermalis Ppri within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn302 b:200.7 occ:1.00 NE2 A:HIS92 3.0 99.7 1.0 ND1 A:HIS96 3.2 93.9 1.0 OE1 A:GLU123 3.6 126.0 1.0 CE1 A:HIS96 3.7 97.2 1.0 CD2 A:HIS92 3.8 102.6 1.0 CE1 A:HIS92 4.0 97.4 1.0 CG A:HIS96 4.1 94.5 1.0 CB A:TYR68 4.3 112.8 1.0 OE1 A:GLU93 4.5 132.9 1.0 CB A:HIS96 4.6 80.0 1.0 OE2 A:GLU93 4.6 128.3 1.0 CD A:GLU123 4.7 119.8 1.0 NE2 A:HIS96 4.7 98.7 1.0 SG A:CYS126 4.7 75.1 1.0 CD A:GLU93 4.9 125.8 1.0 CD2 A:HIS96 4.9 100.1 1.0

H.Lu, Z.Chen, T.Xie, S.Zhong, S.Suo, S.Song, L.Wang, H.Xu, B.Tian, Y.Zhao, R.Zhou, Y.Hua. The Deinococcus Protease Ppri Senses Dna Damage By Directly Interacting with Single-Stranded Dna. Nat Commun V. 15 1892 2024.
ISSN: ESSN 2041-1723
PubMed: 38424107
DOI: 10.1038/S41467-024-46208-9