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Manganese in PDB 8skt: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+

Enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+, PDB code: 8skt was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.58 / 2.69
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.026, 98.394, 142.589, 90, 90, 90
R / Rfree (%) 19.9 / 24.7

Other elements in 8skt:

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ (pdb code 8skt). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 4 binding sites of Manganese where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+, PDB code: 8skt:
Jump to Manganese binding site number: 1; 2; 3; 4;

Manganese binding site 1 out of 4 in 8skt

Go back to Manganese Binding Sites List in 8skt
Manganese binding site 1 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn603

b:51.9
occ:1.00
 OE1 A:GLU211 2.2 44.7 1.0
OD2 A:ASP213 2.2 43.1 1.0
O2G A:ATP601 2.3 42.9 1.0
O2B A:ATP601 2.4 38.4 1.0
O2A A:ATP601 2.5 38.4 1.0
CG A:ASP213 3.1 42.3 1.0
OG A:SER199 3.2 44.7 1.0
CD A:GLU211 3.3 45.4 1.0
OD1 A:ASP213 3.4 43.1 1.0
PG A:ATP601 3.4 35.5 1.0
PB A:ATP601 3.4 38.8 1.0
O A:HOH708 3.5 41.1 1.0
O3B A:ATP601 3.5 38.7 1.0
OE2 A:GLU211 3.7 43.4 1.0
PA A:ATP601 3.7 36.2 1.0
O3A A:ATP601 3.7 41.5 1.0
O1G A:ATP601 4.0 35.5 1.0
N A:SER199 4.0 40.3 1.0
O A:GLU211 4.0 45.2 1.0
MN A:MN604 4.1 55.8 1.0
CB A:SER199 4.3 40.5 1.0
CG A:GLU211 4.5 42.9 1.0
C A:GLU211 4.5 41.9 1.0
CB A:ASP213 4.5 42.2 1.0
C5' A:ATP601 4.5 38.8 1.0
CB A:GLU211 4.5 42.3 1.0
O3G A:ATP601 4.6 42.7 1.0
O5' A:ATP601 4.6 39.2 1.0
N A:ASP213 4.7 38.5 1.0
CA A:SER199 4.7 38.5 1.0
CA A:GLY198 4.8 38.9 1.0
O1B A:ATP601 4.8 42.1 1.0
C A:GLY198 4.8 40.7 1.0
N A:PHE212 4.9 41.9 1.0
C A:PHE212 4.9 42.0 1.0
O1A A:ATP601 4.9 39.8 1.0

Manganese binding site 2 out of 4 in 8skt

Go back to Manganese Binding Sites List in 8skt
Manganese binding site 2 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn604

b:55.8
occ:1.00
 OE2 A:GLU211 2.2 43.4 1.0
OD1 A:ASP213 2.2 43.1 1.0
OD2 A:ASP307 2.3 51.5 1.0
O2A A:ATP601 2.5 38.4 1.0
CG A:ASP213 3.3 42.3 1.0
CD A:GLU211 3.3 45.4 1.0
PA A:ATP601 3.3 36.2 1.0
CG A:ASP307 3.4 48.7 1.0
O1A A:ATP601 3.6 39.8 1.0
OE1 A:GLU211 3.7 44.7 1.0
OD2 A:ASP213 3.8 43.1 1.0
O5' A:ATP601 3.8 39.2 1.0
CB A:ASP307 4.0 46.0 1.0
MN A:MN603 4.1 51.9 1.0
C5' A:ATP601 4.2 38.8 1.0
CB A:ASP213 4.4 42.2 1.0
OD1 A:ASP307 4.5 48.2 1.0
CG A:GLU211 4.6 42.9 1.0
O2G A:ATP601 4.7 42.9 1.0
O3A A:ATP601 4.7 41.5 1.0

Manganese binding site 3 out of 4 in 8skt

Go back to Manganese Binding Sites List in 8skt
Manganese binding site 3 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 3 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn603

b:60.8
occ:1.00
 OE1 C:GLU211 2.2 46.5 1.0
O2A C:ATP601 2.3 42.7 1.0
O1G C:ATP601 2.4 45.6 1.0
O1B C:ATP601 2.4 44.1 1.0
OD2 C:ASP213 2.4 49.3 1.0
PB C:ATP601 3.3 36.4 1.0
CD C:GLU211 3.3 49.2 1.0
PG C:ATP601 3.4 36.6 1.0
CG C:ASP213 3.4 45.9 1.0
O3B C:ATP601 3.4 36.8 1.0
OG C:SER199 3.5 44.4 1.0
O3A C:ATP601 3.6 45.6 1.0
PA C:ATP601 3.6 40.9 1.0
OD1 C:ASP213 3.7 47.9 1.0
OE2 C:GLU211 3.8 49.8 1.0
O3G C:ATP601 4.0 39.2 1.0
O C:GLU211 4.0 46.2 1.0
MN C:MN604 4.0 60.7 1.0
N C:SER199 4.1 41.7 1.0
CB C:SER199 4.3 40.1 1.0
C5' C:ATP601 4.4 43.3 1.0
CB C:GLU211 4.5 46.2 1.0
CG C:GLU211 4.5 44.0 1.0
C C:GLU211 4.5 47.1 1.0
O5' C:ATP601 4.5 42.5 1.0
O1A C:ATP601 4.7 41.5 1.0
O2G C:ATP601 4.7 40.4 1.0
O2B C:ATP601 4.7 43.8 1.0
CB C:ASP213 4.7 44.9 1.0
CA C:GLY198 4.8 42.3 1.0
CA C:SER199 4.8 39.3 1.0
C C:GLY198 4.9 42.4 1.0
N C:PHE212 4.9 47.4 1.0
N C:ASP213 5.0 45.8 1.0

Manganese binding site 4 out of 4 in 8skt

Go back to Manganese Binding Sites List in 8skt
Manganese binding site 4 out of 4 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 4 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mn604

b:60.7
occ:1.00
 OD1 C:ASP213 2.2 47.9 1.0
OE2 C:GLU211 2.2 49.8 1.0
OD2 C:ASP307 2.2 55.5 1.0
O2A C:ATP601 2.5 42.7 1.0
CD C:GLU211 3.2 49.2 1.0
PA C:ATP601 3.3 40.9 1.0
CG C:ASP213 3.3 45.9 1.0
CG C:ASP307 3.4 51.9 1.0
O1A C:ATP601 3.4 41.5 1.0
OE1 C:GLU211 3.5 46.5 1.0
OD2 C:ASP213 3.7 49.3 1.0
O5' C:ATP601 3.8 42.5 1.0
CB C:ASP307 4.0 49.2 1.0
MN C:MN603 4.0 60.8 1.0
C5' C:ATP601 4.0 43.3 1.0
OD1 C:ASP307 4.4 52.8 1.0
CB C:ASP213 4.5 44.9 1.0
CG C:GLU211 4.6 44.0 1.0
O3A C:ATP601 4.6 45.6 1.0
O1G C:ATP601 4.9 45.6 1.0

Reference:

S.Wu, J.Sohn. Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp with 5 Mm MN2+ To Be Published.
Page generated: Sun Oct 6 13:48:19 2024

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