Manganese in PDB 8ppx: Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx was solved by K.Radilova, J.Brynda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.30 / 2.50
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	73.96, 73.96, 128.18, 90, 90, 120
R / Rfree (%)	22.7 / 25.8

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Manganese atom in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound (pdb code 8ppx). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx:

Manganese binding site 1 out of 1 in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:51.5 occ:1.00 O5 A:85W204 1.8 55.9 1.0 O1 A:85W204 1.8 48.5 1.0 OE2 A:GLU119 1.9 46.9 1.0 O A:ILE120 2.1 51.2 1.0 NE2 A:HIS41 2.2 45.3 1.0 OD2 A:ASP108 2.2 39.8 1.0 C14 A:85W204 2.4 58.9 1.0 C1 A:85W204 2.5 54.0 1.0 CD A:GLU119 3.0 52.4 1.0 CE1 A:HIS41 3.1 47.6 1.0 CG A:ASP108 3.1 40.5 1.0 CD2 A:HIS41 3.1 44.1 1.0 C A:ILE120 3.3 48.4 1.0 OD1 A:ASP108 3.4 36.4 1.0 N A:ILE120 3.6 52.0 1.0 OE1 A:GLU119 3.7 58.5 1.0 MG A:MG202 3.7 32.9 1.0 N2 A:85W204 3.7 62.9 1.0 C2 A:85W204 3.9 59.8 1.0 CA A:ILE120 4.0 49.4 1.0 O A:HOH303 4.1 36.9 1.0 ND1 A:HIS41 4.2 45.9 1.0 CG A:GLU119 4.2 50.9 1.0 CG A:HIS41 4.2 44.1 1.0 CE A:LYS134 4.2 68.5 1.0 O A:HOH310 4.3 43.8 1.0 N A:GLY121 4.4 49.5 1.0 CB A:ILE120 4.4 53.4 1.0 CB A:ASP108 4.5 41.5 1.0 OE1 A:GLU80 4.7 40.7 1.0 C A:GLU119 4.7 50.6 1.0 CA A:GLY121 4.7 46.2 1.0 C3 A:85W204 4.7 66.3 1.0 N1 A:85W204 4.8 64.0 1.0 CG2 A:ILE120 5.0 52.1 1.0 NZ A:LYS134 5.0 70.4 1.0 CA A:GLU119 5.0 49.2 1.0

K.Radilova, T.Kotacka, M.Kozisek, M.Kral, A.Machara, R.Reiberger, J.Brynda. Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound To Be Published.