Manganese in PDB 8po5: Lactobacillus Plantarum Lpdd

The structure of Lactobacillus Plantarum Lpdd, PDB code: 8po5 was solved by D.Gahloth, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.03 / 2.10
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	53.5, 92.98, 126.82, 90, 90, 90
R / Rfree (%)	19.5 / 25.2

The binding sites of Manganese atom in the Lactobacillus Plantarum Lpdd (pdb code 8po5). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total 2 binding sites of Manganese where determined in the Lactobacillus Plantarum Lpdd, PDB code: 8po5:
Jump to Manganese binding site number: 1; 2;

Manganese binding site 1 out of 2 in the Lactobacillus Plantarum Lpdd


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Lactobacillus Plantarum Lpdd within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn201 b:38.9 occ:1.00 OD2 A:ASP63 2.0 36.3 1.0 ND1 A:HIS61 2.1 61.0 1.0 NE2 A:HIS35 2.3 34.5 1.0 O A:HOH351 2.6 45.6 1.0 CE1 A:HIS61 2.9 53.9 1.0 CG A:ASP63 3.0 37.4 1.0 CG A:HIS61 3.1 52.4 1.0 O A:HOH357 3.1 38.6 1.0 CE1 A:HIS35 3.1 39.9 1.0 CD2 A:HIS35 3.3 32.0 1.0 OD1 A:ASP63 3.3 32.0 1.0 CB A:HIS61 3.5 44.9 1.0 NE2 A:HIS61 4.1 46.0 1.0 CD2 A:HIS61 4.2 43.8 1.0 CA A:HIS61 4.2 52.2 1.0 ND1 A:HIS35 4.3 38.2 1.0 CB A:ASP63 4.3 26.5 1.0 CG A:HIS35 4.4 34.0 1.0 CA A:GLY37 4.4 29.3 1.0 N A:LYS62 4.5 50.4 1.0 N A:ASP63 4.6 38.6 1.0 O A:ILE88 4.6 38.4 1.0 C A:HIS61 4.8 46.8 1.0 CA A:GLY87 4.9 35.8 1.0

Manganese binding site 2 out of 2 in the Lactobacillus Plantarum Lpdd


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 2 of Lactobacillus Plantarum Lpdd within 5.0Å range: probe atom residue distance (Å) B Occ B:Mn201 b:33.9 occ:1.00 OD2 B:ASP63 2.0 37.0 1.0 ND1 B:HIS61 2.0 37.9 1.0 NE2 B:HIS35 2.1 30.4 1.0 O B:HOH362 2.7 44.6 1.0 CE1 B:HIS61 2.9 38.3 1.0 CG B:ASP63 3.0 34.7 1.0 CE1 B:HIS35 3.1 32.7 1.0 CG B:HIS61 3.1 34.0 1.0 CD2 B:HIS35 3.1 30.7 1.0 O B:HOH365 3.2 38.0 1.0 OD1 B:ASP63 3.3 33.0 1.0 CB B:HIS61 3.6 33.1 1.0 NE2 B:HIS61 4.0 35.9 1.0 CD2 B:HIS61 4.2 35.7 1.0 ND1 B:HIS35 4.2 33.4 1.0 CG B:HIS35 4.3 30.0 1.0 CA B:HIS61 4.3 38.5 1.0 CB B:ASP63 4.3 27.4 1.0 CA B:GLY37 4.5 29.7 1.0 N B:LYS62 4.5 44.9 1.0 O B:ILE88 4.6 34.9 1.0 N B:ASP63 4.7 33.9 1.0 C B:HIS61 4.9 43.8 1.0 CA B:GLY87 5.0 26.9 1.0 N B:ILE88 5.0 33.6 1.0

D.Gahloth, D.Leys. Gallate Decarboxylase Subunit D, Lpdd To Be Published.