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Manganese in PDB 8oeh: Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin

Enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin

All present enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin, PDB code: 8oeh was solved by G.W.Roberts, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.87 / 1.77
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.64, 63.04, 87.15, 90, 90, 90
R / Rfree (%) 19.3 / 23.7

Other elements in 8oeh:

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin also contains other interesting chemical elements:

Potassium (K) 2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin (pdb code 8oeh). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin, PDB code: 8oeh:

Manganese binding site 1 out of 1 in 8oeh

Go back to Manganese Binding Sites List in 8oeh
Manganese binding site 1 out of 1 in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mn602

b:27.2
occ:1.00
 OE2 A:GLU233 2.2 25.3 1.0
O A:HOH711 2.2 23.8 1.0
OD1 A:ASN168 2.2 23.9 1.0
O2P A:4LU601 2.3 28.4 1.0
O A:HOH744 2.3 23.5 1.0
ND1 A:HIS191 2.4 21.6 1.0
CG A:ASN168 3.1 22.1 1.0
CD A:GLU233 3.2 23.9 1.0
CE1 A:HIS191 3.3 23.5 1.0
CG A:HIS191 3.4 22.8 1.0
P A:4LU601 3.4 27.2 1.0
ND2 A:ASN168 3.4 23.4 1.0
O3P A:4LU601 3.5 25.9 1.0
OE1 A:GLU233 3.6 24.5 1.0
K A:K603 3.6 27.8 1.0
CB A:HIS191 3.7 24.3 1.0
O A:ILE227 4.3 27.6 1.0
O1P A:4LU601 4.3 26.2 1.0
CG1 A:ILE227 4.3 24.2 1.0
CZ2 A:TRP166 4.4 30.3 1.0
O A:VAL231 4.4 28.9 1.0
NE2 A:HIS191 4.5 22.7 1.0
CG A:GLU233 4.5 24.9 1.0
CB A:ASN168 4.5 23.9 1.0
CD2 A:HIS191 4.5 24.3 1.0
O5' A:4LU601 4.5 27.1 1.0
NE1 A:TRP166 4.7 29.7 1.0
O A:TRP169 4.7 23.0 1.0
O A:PRO228 4.7 25.4 1.0
CE2 A:TRP166 4.9 28.9 1.0
O A:MET225 4.9 24.2 1.0

Reference:

G.W.Roberts, D.Leys. Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) C122-S261C (DB3) Variant in Complex with Prenylated Flavin To Be Published.
Page generated: Sun Oct 6 13:29:28 2024

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