Manganese in PDB 8oed: Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

Enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

All present enzymatic activity of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position:
4.1.1.102;

Protein crystallography data

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8oed was solved by G.W.Roberts, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	87.71 / 1.37
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	95.879, 63.995, 87.708, 90, 90, 90
*R / R_free (%)*	15.1 / 16.6

Other elements in 8oed:

The structure of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position also contains other interesting chemical elements:

Potassium

(K)

2 atoms

Manganese Binding Sites:

The binding sites of Manganese atom in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position (pdb code 8oed). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position, PDB code: 8oed:

Manganese binding site 1 out of 1 in 8oed

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Manganese Binding Sites List in 8oed

Manganese binding site 1 out of 1 in the Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position

Mono view

Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) S145C-P289C (DB2) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mn602 b:10.8 occ:1.00	OE2	A:GLU233	2.1	10.6	1.0
	OD1	A:ASN168	2.2	9.9	1.0
	O	A:HOH734	2.2	10.9	1.0
	O9	A:BYN601	2.2	10.0	1.0
	O	A:HOH846	2.3	10.6	1.0
	ND1	A:HIS191	2.3	10.0	1.0
	CG	A:ASN168	3.1	10.8	1.0
	CD	A:GLU233	3.1	11.0	1.0
	CE1	A:HIS191	3.2	10.2	1.0
	P1	A:BYN601	3.4	10.5	1.0
	CG	A:HIS191	3.4	10.4	1.0
	ND2	A:ASN168	3.4	11.3	1.0
	OE1	A:GLU233	3.5	11.5	1.0
	O10	A:BYN601	3.6	10.0	1.0
	K	A:K603	3.7	10.6	1.0
	CB	A:HIS191	3.8	11.4	1.0
	O8	A:BYN601	4.3	12.2	1.0
	O	A:ILE227	4.3	11.4	1.0
	CG1	A:ILE227	4.4	12.7	1.0
	CZ2	A:TRP166	4.4	12.5	1.0
	NE2	A:HIS191	4.4	10.6	1.0
	CB	A:ASN168	4.5	10.4	1.0
	O	A:VAL231	4.5	12.1	1.0
	CG	A:GLU233	4.5	10.3	1.0
	CD2	A:HIS191	4.5	10.6	1.0
	O7	A:BYN601	4.5	10.5	1.0
	O	A:TRP169	4.6	10.2	1.0
	NE1	A:TRP166	4.6	12.2	1.0
	O	A:PRO228	4.7	11.3	1.0
	CE2	A:TRP166	4.9	12.4	1.0

Reference:

G.W.Roberts, D.Leys. Aspergillus Niger Ferulic Acid Decarboxylase (Fdc) T40C-S315C (DB1) Variant in Complex with Prenylated Flavin Hydroxylated at the C1 Prime Position To Be Published.

Page generated: Sun Oct 6 13:29:14 2024

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