Manganese in PDB 8odp: Structure of Human Rtcb with Gmpcpp in Complex with Archease
Enzymatic activity of Structure of Human Rtcb with Gmpcpp in Complex with Archease
All present enzymatic activity of Structure of Human Rtcb with Gmpcpp in Complex with Archease:
6.5.1.8;
Protein crystallography data
The structure of Structure of Human Rtcb with Gmpcpp in Complex with Archease, PDB code: 8odp
was solved by
J.Kopp,
J.L.Gerber,
J.Peschek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
51.29 /
2.30
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
98.433,
122.597,
124.759,
90,
107.88,
90
|
|
R / Rfree (%)
|
18.1 /
21.6
|
Manganese Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Manganese atom in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
(pdb code 8odp). This binding sites where shown within
5.0 Angstroms radius around Manganese atom.
In total 12 binding sites of Manganese where determined in the
Structure of Human Rtcb with Gmpcpp in Complex with Archease, PDB code: 8odp:
Jump to Manganese binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Manganese binding site 1 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 1 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 1 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn601
b:40.2
occ:1.00
|
O
|
A:HOH708
|
2.1
|
45.6
|
1.0
|
|
O2A
|
A:G2P603
|
2.1
|
42.9
|
1.0
|
|
NE2
|
A:HIS353
|
2.3
|
41.4
|
1.0
|
|
NE2
|
A:HIS259
|
2.3
|
48.9
|
1.0
|
|
O1B
|
A:G2P603
|
2.4
|
40.3
|
1.0
|
|
SG
|
A:CYS122
|
2.5
|
37.0
|
1.0
|
|
CE1
|
A:HIS259
|
3.0
|
47.0
|
1.0
|
|
CE1
|
A:HIS353
|
3.1
|
41.9
|
1.0
|
|
CD2
|
A:HIS353
|
3.4
|
38.9
|
1.0
|
|
MN
|
A:MN602
|
3.5
|
63.8
|
1.0
|
|
CD2
|
A:HIS259
|
3.5
|
45.6
|
1.0
|
|
PB
|
A:G2P603
|
3.5
|
47.4
|
1.0
|
|
PA
|
A:G2P603
|
3.6
|
45.4
|
1.0
|
|
CB
|
A:CYS122
|
3.6
|
37.0
|
1.0
|
|
O3B
|
A:G2P603
|
3.8
|
52.4
|
1.0
|
|
O3G
|
A:G2P603
|
3.9
|
47.3
|
1.0
|
|
C3A
|
A:G2P603
|
4.2
|
53.7
|
1.0
|
|
ND1
|
A:HIS259
|
4.2
|
50.8
|
1.0
|
|
ND1
|
A:HIS353
|
4.3
|
45.9
|
1.0
|
|
H5'1
|
A:G2P603
|
4.3
|
57.0
|
1.0
|
|
PG
|
A:G2P603
|
4.3
|
56.5
|
1.0
|
|
O2G
|
A:G2P603
|
4.4
|
42.9
|
1.0
|
|
O1A
|
A:G2P603
|
4.4
|
44.6
|
1.0
|
|
CG
|
A:HIS353
|
4.4
|
45.7
|
1.0
|
|
CG
|
A:HIS259
|
4.5
|
43.2
|
1.0
|
|
C
|
A:CYS122
|
4.6
|
39.5
|
1.0
|
|
H3A2
|
A:G2P603
|
4.6
|
64.6
|
1.0
|
|
O5'
|
A:G2P603
|
4.6
|
51.7
|
1.0
|
|
CA
|
A:CYS122
|
4.7
|
42.5
|
1.0
|
|
H5'2
|
A:G2P603
|
4.7
|
57.0
|
1.0
|
|
C5'
|
A:G2P603
|
4.8
|
47.4
|
1.0
|
|
O
|
A:CYS122
|
4.8
|
45.6
|
1.0
|
|
NE2
|
A:HIS227
|
4.8
|
46.4
|
1.0
|
|
O2B
|
A:G2P603
|
4.8
|
50.6
|
1.0
|
|
CD2
|
A:HIS428
|
4.8
|
40.6
|
1.0
|
|
N
|
A:GLY123
|
4.9
|
40.7
|
1.0
|
|
CD2
|
A:HIS227
|
5.0
|
42.2
|
1.0
|
|
Manganese binding site 2 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 2 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 2 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mn602
b:63.8
occ:1.00
|
O3G
|
A:G2P603
|
2.0
|
47.3
|
1.0
|
|
OD2
|
A:ASP119
|
2.0
|
43.6
|
1.0
|
|
NE2
|
A:HIS227
|
2.1
|
46.4
|
1.0
|
|
SG
|
A:CYS122
|
2.5
|
37.0
|
1.0
|
|
O1B
|
A:G2P603
|
2.6
|
40.3
|
1.0
|
|
CE1
|
A:HIS227
|
3.0
|
41.0
|
1.0
|
|
CD2
|
A:HIS227
|
3.1
|
42.2
|
1.0
|
|
CG
|
A:ASP119
|
3.1
|
42.0
|
1.0
|
|
PG
|
A:G2P603
|
3.4
|
56.5
|
1.0
|
|
CB
|
A:CYS122
|
3.4
|
37.0
|
1.0
|
|
MN
|
A:MN601
|
3.5
|
40.2
|
1.0
|
|
PB
|
A:G2P603
|
3.6
|
47.4
|
1.0
|
|
NZ
|
B:LYS156
|
3.6
|
49.8
|
1.0
|
|
O
|
A:HOH708
|
3.7
|
45.6
|
1.0
|
|
O2B
|
A:G2P603
|
3.8
|
50.6
|
1.0
|
|
CB
|
A:ASP119
|
3.8
|
30.4
|
1.0
|
|
O3B
|
A:G2P603
|
3.9
|
52.4
|
1.0
|
|
OD1
|
A:ASP119
|
4.0
|
41.5
|
1.0
|
|
ND1
|
A:HIS227
|
4.2
|
44.4
|
1.0
|
|
O2G
|
A:G2P603
|
4.2
|
42.9
|
1.0
|
|
CG
|
A:HIS227
|
4.2
|
51.5
|
1.0
|
|
NE2
|
A:HIS259
|
4.3
|
48.9
|
1.0
|
|
O1G
|
A:G2P603
|
4.4
|
44.2
|
1.0
|
|
O
|
A:HOH779
|
4.5
|
39.9
|
1.0
|
|
N
|
A:GLY261
|
4.6
|
42.7
|
1.0
|
|
CA
|
A:CYS122
|
4.7
|
42.5
|
1.0
|
|
CE
|
B:LYS156
|
4.8
|
50.4
|
1.0
|
|
CE1
|
A:HIS259
|
4.8
|
47.0
|
1.0
|
|
C
|
A:SER260
|
4.8
|
42.5
|
1.0
|
|
CA
|
A:GLY261
|
4.8
|
32.4
|
1.0
|
|
O2A
|
A:G2P603
|
4.9
|
42.9
|
1.0
|
|
CD2
|
A:HIS259
|
5.0
|
45.6
|
1.0
|
|
Manganese binding site 3 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 3 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 3 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mn201
b:54.0
occ:1.00
|
O
|
B:HOH333
|
2.1
|
52.3
|
1.0
|
|
OD1
|
B:ASP178
|
2.1
|
45.8
|
1.0
|
|
OD1
|
B:ASP51
|
2.2
|
45.1
|
1.0
|
|
O
|
B:ILE179
|
2.2
|
50.2
|
1.0
|
|
O
|
A:HOH776
|
2.4
|
49.4
|
1.0
|
|
O1G
|
A:G2P603
|
2.6
|
44.2
|
1.0
|
|
CG
|
B:ASP51
|
3.3
|
46.8
|
1.0
|
|
CG
|
B:ASP178
|
3.3
|
38.7
|
1.0
|
|
C
|
B:ILE179
|
3.4
|
54.0
|
1.0
|
|
OD2
|
B:ASP51
|
3.6
|
46.6
|
1.0
|
|
N
|
B:ILE179
|
3.6
|
46.4
|
1.0
|
|
PG
|
A:G2P603
|
3.8
|
56.5
|
1.0
|
|
OD2
|
B:ASP178
|
4.0
|
47.6
|
1.0
|
|
O
|
A:HOH785
|
4.0
|
39.5
|
1.0
|
|
O3B
|
A:G2P603
|
4.1
|
52.4
|
1.0
|
|
CA
|
B:ILE179
|
4.1
|
44.4
|
1.0
|
|
NZ
|
B:LYS156
|
4.2
|
49.8
|
1.0
|
|
O
|
A:HOH715
|
4.3
|
56.4
|
1.0
|
|
C
|
B:ASP178
|
4.3
|
42.7
|
1.0
|
|
OXT
|
B:ILE179
|
4.3
|
52.4
|
1.0
|
|
CA
|
B:ASP178
|
4.4
|
44.1
|
1.0
|
|
CB
|
B:ASP178
|
4.5
|
40.3
|
1.0
|
|
O2G
|
A:G2P603
|
4.6
|
42.9
|
1.0
|
|
O
|
B:ALA50
|
4.6
|
44.4
|
1.0
|
|
CB
|
B:ASP51
|
4.6
|
38.2
|
1.0
|
|
CD
|
B:LYS156
|
4.6
|
41.0
|
1.0
|
|
O2B
|
A:G2P603
|
4.7
|
50.6
|
1.0
|
|
NH2
|
A:ARG436
|
4.7
|
64.3
|
1.0
|
|
CE2
|
A:TYR92
|
4.7
|
44.4
|
1.0
|
|
CE
|
B:LYS156
|
4.8
|
50.4
|
1.0
|
|
CG1
|
B:ILE179
|
4.9
|
49.0
|
1.0
|
|
O3G
|
A:G2P603
|
5.0
|
47.3
|
1.0
|
|
Manganese binding site 4 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 4 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 4 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn601
b:48.8
occ:1.00
|
O2A
|
C:G2P603
|
2.0
|
47.3
|
1.0
|
|
O
|
C:HOH709
|
2.1
|
45.0
|
1.0
|
|
NE2
|
C:HIS259
|
2.3
|
49.7
|
1.0
|
|
NE2
|
C:HIS353
|
2.4
|
46.5
|
1.0
|
|
O1B
|
C:G2P603
|
2.5
|
53.2
|
1.0
|
|
SG
|
C:CYS122
|
2.7
|
46.3
|
1.0
|
|
CE1
|
C:HIS259
|
2.9
|
49.1
|
1.0
|
|
CE1
|
C:HIS353
|
3.2
|
47.5
|
1.0
|
|
MN
|
C:MN602
|
3.2
|
101.4
|
1.0
|
|
PA
|
C:G2P603
|
3.4
|
42.6
|
1.0
|
|
CD2
|
C:HIS353
|
3.5
|
47.3
|
1.0
|
|
CD2
|
C:HIS259
|
3.5
|
50.8
|
1.0
|
|
PB
|
C:G2P603
|
3.5
|
45.8
|
1.0
|
|
CB
|
C:CYS122
|
3.7
|
37.4
|
1.0
|
|
O3B
|
C:G2P603
|
3.7
|
46.0
|
1.0
|
|
O3G
|
C:G2P603
|
4.0
|
54.8
|
1.0
|
|
C3A
|
C:G2P603
|
4.1
|
56.6
|
1.0
|
|
O1A
|
C:G2P603
|
4.2
|
47.3
|
1.0
|
|
ND1
|
C:HIS259
|
4.2
|
49.1
|
1.0
|
|
O
|
C:HOH713
|
4.3
|
49.0
|
1.0
|
|
H3A2
|
C:G2P603
|
4.3
|
68.1
|
1.0
|
|
H5'2
|
C:G2P603
|
4.3
|
65.0
|
1.0
|
|
PG
|
C:G2P603
|
4.4
|
58.2
|
1.0
|
|
ND1
|
C:HIS353
|
4.4
|
51.8
|
1.0
|
|
CG
|
C:HIS259
|
4.5
|
52.5
|
1.0
|
|
O2G
|
C:G2P603
|
4.5
|
48.2
|
1.0
|
|
CG
|
C:HIS353
|
4.5
|
52.8
|
1.0
|
|
O5'
|
C:G2P603
|
4.5
|
56.6
|
1.0
|
|
CD2
|
C:HIS428
|
4.6
|
49.5
|
1.0
|
|
C
|
C:CYS122
|
4.7
|
41.3
|
1.0
|
|
NE2
|
C:HIS227
|
4.7
|
58.9
|
1.0
|
|
OD2
|
C:ASP119
|
4.7
|
58.6
|
1.0
|
|
NE2
|
C:HIS428
|
4.8
|
54.4
|
1.0
|
|
CD2
|
C:HIS227
|
4.8
|
51.1
|
1.0
|
|
CA
|
C:CYS122
|
4.8
|
42.0
|
1.0
|
|
ND2
|
C:ASN354
|
4.9
|
53.0
|
1.0
|
|
O2B
|
C:G2P603
|
4.9
|
57.4
|
1.0
|
|
O
|
C:CYS122
|
4.9
|
41.6
|
1.0
|
|
N
|
C:GLY123
|
4.9
|
41.9
|
1.0
|
|
C5'
|
C:G2P603
|
4.9
|
54.1
|
1.0
|
|
H3A1
|
C:G2P603
|
5.0
|
68.1
|
1.0
|
|
Manganese binding site 5 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 5 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 5 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mn602
b:101.4
occ:1.00
|
OD2
|
C:ASP119
|
1.9
|
58.6
|
1.0
|
|
NE2
|
C:HIS227
|
2.1
|
58.9
|
1.0
|
|
O3G
|
C:G2P603
|
2.2
|
54.8
|
1.0
|
|
O1B
|
C:G2P603
|
2.3
|
53.2
|
1.0
|
|
SG
|
C:CYS122
|
2.4
|
46.3
|
1.0
|
|
CD2
|
C:HIS227
|
3.0
|
51.1
|
1.0
|
|
CE1
|
C:HIS227
|
3.1
|
47.0
|
1.0
|
|
CG
|
C:ASP119
|
3.1
|
42.2
|
1.0
|
|
MN
|
C:MN601
|
3.2
|
48.8
|
1.0
|
|
O
|
C:HOH709
|
3.4
|
45.0
|
1.0
|
|
PB
|
C:G2P603
|
3.4
|
45.8
|
1.0
|
|
PG
|
C:G2P603
|
3.5
|
58.2
|
1.0
|
|
CB
|
C:CYS122
|
3.5
|
37.4
|
1.0
|
|
O3B
|
C:G2P603
|
3.8
|
46.0
|
1.0
|
|
O2B
|
C:G2P603
|
3.8
|
57.4
|
1.0
|
|
NZ
|
D:LYS156
|
3.8
|
56.2
|
1.0
|
|
CB
|
C:ASP119
|
3.9
|
43.3
|
1.0
|
|
OD1
|
C:ASP119
|
4.0
|
42.6
|
1.0
|
|
CG
|
C:HIS227
|
4.2
|
55.3
|
1.0
|
|
ND1
|
C:HIS227
|
4.2
|
54.0
|
1.0
|
|
NE2
|
C:HIS259
|
4.2
|
49.7
|
1.0
|
|
O2G
|
C:G2P603
|
4.3
|
48.2
|
1.0
|
|
CE1
|
C:HIS259
|
4.5
|
49.1
|
1.0
|
|
O1G
|
C:G2P603
|
4.5
|
50.6
|
1.0
|
|
O2A
|
C:G2P603
|
4.6
|
47.3
|
1.0
|
|
O
|
C:HOH740
|
4.8
|
47.0
|
1.0
|
|
CA
|
C:CYS122
|
4.8
|
42.0
|
1.0
|
|
N
|
C:GLY261
|
4.9
|
39.6
|
1.0
|
|
CE
|
D:LYS156
|
4.9
|
56.3
|
1.0
|
|
CD2
|
C:HIS259
|
5.0
|
50.8
|
1.0
|
|
C3A
|
C:G2P603
|
5.0
|
56.6
|
1.0
|
|
Manganese binding site 6 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 6 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 6 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mn201
b:52.8
occ:1.00
|
OD1
|
D:ASP178
|
2.1
|
50.6
|
1.0
|
|
O
|
D:ILE179
|
2.1
|
54.0
|
1.0
|
|
OD1
|
D:ASP51
|
2.2
|
44.3
|
1.0
|
|
O
|
D:HOH307
|
2.3
|
46.4
|
1.0
|
|
O
|
D:HOH317
|
2.3
|
49.3
|
1.0
|
|
O1G
|
C:G2P603
|
2.4
|
50.6
|
1.0
|
|
CG
|
D:ASP51
|
3.3
|
46.2
|
1.0
|
|
CG
|
D:ASP178
|
3.3
|
42.3
|
1.0
|
|
C
|
D:ILE179
|
3.3
|
59.4
|
1.0
|
|
N
|
D:ILE179
|
3.5
|
43.0
|
1.0
|
|
OD2
|
D:ASP51
|
3.6
|
44.6
|
1.0
|
|
PG
|
C:G2P603
|
3.8
|
58.2
|
1.0
|
|
OD2
|
D:ASP178
|
3.9
|
43.0
|
1.0
|
|
NZ
|
D:LYS156
|
4.0
|
56.2
|
1.0
|
|
CA
|
D:ILE179
|
4.1
|
48.2
|
1.0
|
|
O
|
C:HOH739
|
4.1
|
45.2
|
1.0
|
|
O3B
|
C:G2P603
|
4.2
|
46.0
|
1.0
|
|
OXT
|
D:ILE179
|
4.2
|
62.3
|
1.0
|
|
C
|
D:ASP178
|
4.3
|
47.1
|
1.0
|
|
CA
|
D:ASP178
|
4.4
|
41.8
|
1.0
|
|
CB
|
D:ASP178
|
4.4
|
42.2
|
1.0
|
|
O
|
C:HOH725
|
4.5
|
44.3
|
1.0
|
|
CD
|
D:LYS156
|
4.5
|
42.2
|
1.0
|
|
O
|
D:ALA50
|
4.5
|
44.0
|
1.0
|
|
O2G
|
C:G2P603
|
4.6
|
48.2
|
1.0
|
|
CE2
|
C:TYR92
|
4.6
|
36.5
|
1.0
|
|
O2B
|
C:G2P603
|
4.6
|
57.4
|
1.0
|
|
CB
|
D:ASP51
|
4.6
|
37.4
|
1.0
|
|
CE
|
D:LYS156
|
4.7
|
56.3
|
1.0
|
|
CG1
|
D:ILE179
|
4.8
|
51.5
|
1.0
|
|
O3G
|
C:G2P603
|
4.9
|
54.8
|
1.0
|
|
Manganese binding site 7 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 7 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 7 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn601
b:53.6
occ:1.00
|
O
|
E:HOH713
|
2.0
|
49.4
|
1.0
|
|
O2A
|
E:G2P603
|
2.0
|
48.1
|
1.0
|
|
NE2
|
E:HIS259
|
2.2
|
57.2
|
1.0
|
|
NE2
|
E:HIS353
|
2.3
|
58.5
|
1.0
|
|
SG
|
E:CYS122
|
2.5
|
54.0
|
1.0
|
|
O1B
|
E:G2P603
|
2.7
|
41.8
|
1.0
|
|
CE1
|
E:HIS259
|
2.9
|
58.1
|
1.0
|
|
CE1
|
E:HIS353
|
3.1
|
61.9
|
1.0
|
|
CD2
|
E:HIS353
|
3.4
|
59.6
|
1.0
|
|
CD2
|
E:HIS259
|
3.4
|
60.5
|
1.0
|
|
MN
|
E:MN602
|
3.4
|
57.0
|
1.0
|
|
PA
|
E:G2P603
|
3.4
|
51.1
|
1.0
|
|
PB
|
E:G2P603
|
3.6
|
57.0
|
1.0
|
|
CB
|
E:CYS122
|
3.7
|
51.8
|
1.0
|
|
O3B
|
E:G2P603
|
3.7
|
55.3
|
1.0
|
|
O3G
|
E:G2P603
|
4.0
|
55.8
|
1.0
|
|
C3A
|
E:G2P603
|
4.1
|
61.5
|
1.0
|
|
ND1
|
E:HIS259
|
4.1
|
58.1
|
1.0
|
|
O1A
|
E:G2P603
|
4.1
|
50.5
|
1.0
|
|
H5'2
|
E:G2P603
|
4.2
|
78.0
|
1.0
|
|
ND1
|
E:HIS353
|
4.3
|
66.7
|
1.0
|
|
H3A2
|
E:G2P603
|
4.3
|
73.9
|
1.0
|
|
PG
|
E:G2P603
|
4.4
|
65.5
|
1.0
|
|
CG
|
E:HIS259
|
4.4
|
55.1
|
1.0
|
|
CG
|
E:HIS353
|
4.4
|
67.6
|
1.0
|
|
CD2
|
E:HIS428
|
4.6
|
75.3
|
1.0
|
|
O5'
|
E:G2P603
|
4.6
|
63.1
|
1.0
|
|
C
|
E:CYS122
|
4.6
|
59.0
|
1.0
|
|
O2G
|
E:G2P603
|
4.7
|
60.0
|
1.0
|
|
CA
|
E:CYS122
|
4.8
|
59.3
|
1.0
|
|
NE2
|
E:HIS428
|
4.8
|
77.8
|
1.0
|
|
C5'
|
E:G2P603
|
4.8
|
64.9
|
1.0
|
|
O
|
E:CYS122
|
4.9
|
59.1
|
1.0
|
|
NE2
|
E:HIS227
|
4.9
|
58.2
|
1.0
|
|
N
|
E:GLY123
|
4.9
|
57.3
|
1.0
|
|
ND2
|
E:ASN354
|
4.9
|
65.4
|
1.0
|
|
CD2
|
E:HIS227
|
4.9
|
57.7
|
1.0
|
|
H3A1
|
E:G2P603
|
5.0
|
73.9
|
1.0
|
|
O2B
|
E:G2P603
|
5.0
|
70.5
|
1.0
|
|
Manganese binding site 8 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 8 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 8 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mn602
b:57.0
occ:1.00
|
O3G
|
E:G2P603
|
2.0
|
55.8
|
1.0
|
|
OD2
|
E:ASP119
|
2.1
|
56.2
|
1.0
|
|
NE2
|
E:HIS227
|
2.2
|
58.2
|
1.0
|
|
O1B
|
E:G2P603
|
2.4
|
41.8
|
1.0
|
|
SG
|
E:CYS122
|
2.6
|
54.0
|
1.0
|
|
CD2
|
E:HIS227
|
3.1
|
57.7
|
1.0
|
|
CG
|
E:ASP119
|
3.2
|
51.5
|
1.0
|
|
CE1
|
E:HIS227
|
3.2
|
56.4
|
1.0
|
|
PG
|
E:G2P603
|
3.4
|
65.5
|
1.0
|
|
PB
|
E:G2P603
|
3.4
|
57.0
|
1.0
|
|
MN
|
E:MN601
|
3.4
|
53.6
|
1.0
|
|
O
|
E:HOH713
|
3.5
|
49.4
|
1.0
|
|
CB
|
E:CYS122
|
3.5
|
51.8
|
1.0
|
|
NZ
|
F:LYS156
|
3.6
|
59.9
|
1.0
|
|
O3B
|
E:G2P603
|
3.7
|
55.3
|
1.0
|
|
CB
|
E:ASP119
|
3.8
|
48.2
|
1.0
|
|
O2B
|
E:G2P603
|
3.9
|
70.5
|
1.0
|
|
OD1
|
E:ASP119
|
4.2
|
48.8
|
1.0
|
|
O1G
|
E:G2P603
|
4.3
|
57.1
|
1.0
|
|
CG
|
E:HIS227
|
4.3
|
64.0
|
1.0
|
|
ND1
|
E:HIS227
|
4.3
|
60.1
|
1.0
|
|
O2G
|
E:G2P603
|
4.3
|
60.0
|
1.0
|
|
NE2
|
E:HIS259
|
4.3
|
57.2
|
1.0
|
|
CE
|
F:LYS156
|
4.6
|
57.5
|
1.0
|
|
CE1
|
E:HIS259
|
4.7
|
58.1
|
1.0
|
|
O
|
E:HOH709
|
4.7
|
53.2
|
1.0
|
|
N
|
E:GLY261
|
4.7
|
51.9
|
1.0
|
|
O2A
|
E:G2P603
|
4.8
|
48.1
|
1.0
|
|
CA
|
E:CYS122
|
4.9
|
59.3
|
1.0
|
|
CA
|
E:GLY261
|
5.0
|
51.2
|
1.0
|
|
Manganese binding site 9 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 9 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 9 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mn201
b:55.7
occ:1.00
|
OD1
|
F:ASP178
|
2.2
|
47.4
|
1.0
|
|
OD1
|
F:ASP51
|
2.2
|
52.7
|
1.0
|
|
O
|
F:HOH316
|
2.2
|
59.3
|
1.0
|
|
O
|
F:HOH310
|
2.2
|
47.7
|
1.0
|
|
O
|
F:ILE179
|
2.4
|
55.9
|
1.0
|
|
O1G
|
E:G2P603
|
2.6
|
57.1
|
1.0
|
|
CG
|
F:ASP51
|
3.2
|
53.3
|
1.0
|
|
CG
|
F:ASP178
|
3.4
|
49.4
|
1.0
|
|
OD2
|
F:ASP51
|
3.5
|
58.5
|
1.0
|
|
C
|
F:ILE179
|
3.6
|
60.1
|
1.0
|
|
N
|
F:ILE179
|
3.6
|
49.6
|
1.0
|
|
PG
|
E:G2P603
|
4.0
|
65.5
|
1.0
|
|
OD2
|
F:ASP178
|
4.0
|
49.2
|
1.0
|
|
NZ
|
F:LYS156
|
4.1
|
59.9
|
1.0
|
|
CA
|
F:ILE179
|
4.2
|
56.9
|
1.0
|
|
C
|
F:ASP178
|
4.3
|
49.5
|
1.0
|
|
O3B
|
E:G2P603
|
4.3
|
55.3
|
1.0
|
|
CA
|
F:ASP178
|
4.4
|
50.9
|
1.0
|
|
O2B
|
E:G2P603
|
4.4
|
70.5
|
1.0
|
|
CE2
|
E:TYR92
|
4.5
|
47.4
|
1.0
|
|
CB
|
F:ASP178
|
4.5
|
49.3
|
1.0
|
|
O
|
F:ALA50
|
4.5
|
55.9
|
1.0
|
|
OXT
|
F:ILE179
|
4.5
|
66.2
|
1.0
|
|
CB
|
F:ASP51
|
4.6
|
52.1
|
1.0
|
|
O2G
|
E:G2P603
|
4.6
|
60.0
|
1.0
|
|
CD
|
F:LYS156
|
4.6
|
56.5
|
1.0
|
|
CE
|
F:LYS156
|
4.8
|
57.5
|
1.0
|
|
CG1
|
F:ILE179
|
4.9
|
59.7
|
1.0
|
|
Manganese binding site 10 out
of 12 in 8odp
Go back to
Manganese Binding Sites List in 8odp
Manganese binding site 10 out
of 12 in the Structure of Human Rtcb with Gmpcpp in Complex with Archease
 Mono view
 Stereo pair view
|
|
A full contact list of Manganese with other atoms in the Mn binding
site number 10 of Structure of Human Rtcb with Gmpcpp in Complex with Archease within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mn601
b:52.9
occ:1.00
|
O
|
G:HOH703
|
2.0
|
64.4
|
1.0
|
|
O2A
|
G:G2P603
|
2.2
|
56.5
|
1.0
|
|
NE2
|
G:HIS259
|
2.2
|
64.3
|
1.0
|
|
NE2
|
G:HIS353
|
2.3
|
59.1
|
1.0
|
|
SG
|
G:CYS122
|
2.4
|
50.6
|
1.0
|
|
O1B
|
G:G2P603
|
2.6
|
57.6
|
1.0
|
|
CE1
|
G:HIS353
|
2.9
|
57.2
|
1.0
|
|
CE1
|
G:HIS259
|
3.0
|
70.8
|
1.0
|
|
O3G
|
G:G2P603
|
3.3
|
55.1
|
1.0
|
|
CD2
|
G:HIS259
|
3.4
|
62.2
|
1.0
|
|
MN
|
G:MN602
|
3.4
|
55.8
|
1.0
|
|
CD2
|
G:HIS353
|
3.5
|
62.1
|
1.0
|
|
PA
|
G:G2P603
|
3.5
|
61.6
|
1.0
|
|
PB
|
G:G2P603
|
3.5
|
61.0
|
1.0
|
|
CB
|
G:CYS122
|
3.5
|
51.8
|
1.0
|
|
O3B
|
G:G2P603
|
3.8
|
68.2
|
1.0
|
|
C3A
|
G:G2P603
|
3.9
|
76.3
|
1.0
|
|
H3A2
|
G:G2P603
|
3.9
|
91.7
|
1.0
|
|
ND1
|
G:HIS353
|
4.2
|
69.1
|
1.0
|
|
ND1
|
G:HIS259
|
4.2
|
72.4
|
1.0
|
|
PG
|
G:G2P603
|
4.2
|
73.6
|
1.0
|
|
O1A
|
G:G2P603
|
4.3
|
60.7
|
1.0
|
|
CG
|
G:HIS259
|
4.4
|
66.5
|
1.0
|
|
CG
|
G:HIS353
|
4.5
|
61.3
|
1.0
|
|
H5'2
|
G:G2P603
|
4.5
|
87.1
|
1.0
|
|
C
|
G:CYS122
|
4.6
|
56.0
|
1.0
|
|
CD2
|
G:HIS428
|
4.6
|
69.4
|
1.0
|
|
CA
|
G:CYS122
|
4.7
|
55.7
|
1.0
|
|
O5'
|
G:G2P603
|
4.7
|
69.4
|
1.0
|
|
NE2
|
G:HIS428
|
4.7
|
66.8
|
1.0
|
|
O
|
G:CYS122
|
4.8
|
54.6
|
1.0
|
|
NE2
|
G:HIS227
|
4.8
|
64.2
|
1.0
|
|
N
|
G:GLY123
|
4.8
|
51.0
|
1.0
|
|
CD2
|
G:HIS227
|
4.8
|
67.7
|
1.0
|
|
H3A1
|
G:G2P603
|
4.9
|
91.7
|
1.0
|
|
ND2
|
G:ASN354
|
4.9
|
65.3
|
1.0
|
|
O2B
|
G:G2P603
|
4.9
|
79.7
|
1.0
|
|
Reference:
J.Kopp,
J.L.Gerber,
J.Peschek.
Structure of Human Rtcb Archease Complex To Be Published.
Page generated: Sun Oct 6 13:29:03 2024
|
