Manganese in PDB 8khw: The Crystal Structure of Glycosaminoglycan Lyase Gagase VII

The structure of The Crystal Structure of Glycosaminoglycan Lyase Gagase VII, PDB code: 8khw was solved by L.Wei, H.Y.Cao, F.C.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.87 / 2.40
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	98.407, 98.407, 134.75, 90, 90, 90
R / Rfree (%)	20.7 / 27.1

The binding sites of Manganese atom in the The Crystal Structure of Glycosaminoglycan Lyase Gagase VII (pdb code 8khw). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of Glycosaminoglycan Lyase Gagase VII, PDB code: 8khw:

Manganese binding site 1 out of 1 in the The Crystal Structure of Glycosaminoglycan Lyase Gagase VII


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Glycosaminoglycan Lyase Gagase VII within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:45.5 occ:1.00 ND1 A:HIS399 2.0 47.6 1.0 NE2 A:HIS453 2.1 42.0 1.0 OD1 A:ASP417 2.4 46.6 1.0 CE1 A:HIS399 2.8 44.3 1.0 CD2 A:HIS453 2.9 40.6 1.0 CG A:ASP417 3.0 41.8 1.0 OD2 A:ASP417 3.1 43.7 1.0 CG A:HIS399 3.2 49.0 1.0 CE1 A:HIS453 3.3 43.5 1.0 CB A:HIS399 3.7 44.1 1.0 NE2 A:HIS399 4.0 53.2 1.0 O A:ARG447 4.0 47.3 1.0 N A:GLY419 4.1 49.4 1.0 CG A:HIS453 4.1 42.1 1.0 CD2 A:HIS399 4.2 45.9 1.0 N A:GLY293 4.2 43.2 1.0 ND1 A:HIS453 4.3 43.9 1.0 O A:GLY293 4.3 48.6 1.0 CA A:GLY419 4.4 43.0 1.0 CB A:ASP417 4.4 44.5 1.0 OD2 A:ASP401 4.5 49.2 1.0 O A:GLY419 4.5 42.7 1.0 O A:ASN291 4.6 39.3 1.0 CA A:GLY293 4.6 39.9 1.0 C A:GLY419 4.7 50.5 1.0 N A:LEU418 4.7 45.1 1.0 C A:GLY293 4.9 47.8 1.0 C A:TYR292 4.9 42.4 1.0 CA A:TYR292 5.0 38.6 1.0

L.Wei, H.Y.Cao, F.C.Li. The Crystal Structure of Glycosaminoglycan Lyase Gagase VII To Be Published.