Manganese in PDB 8khv: The Crystal Structure of Glycosaminoglycan Lyase Gagase II

The structure of The Crystal Structure of Glycosaminoglycan Lyase Gagase II, PDB code: 8khv was solved by L.Wei, H.Y.Cao, F.C.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.01 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.917, 82.096, 79.885, 90, 106.59, 90
R / Rfree (%)	15.9 / 19.2

The structure of The Crystal Structure of Glycosaminoglycan Lyase Gagase II also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Manganese atom in the The Crystal Structure of Glycosaminoglycan Lyase Gagase II (pdb code 8khv). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the The Crystal Structure of Glycosaminoglycan Lyase Gagase II, PDB code: 8khv:

Manganese binding site 1 out of 1 in the The Crystal Structure of Glycosaminoglycan Lyase Gagase II


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of The Crystal Structure of Glycosaminoglycan Lyase Gagase II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn701 b:19.2 occ:1.00 NE2 A:HIS457 2.3 3.2 1.0 O A:HOH812 2.4 5.4 1.0 OD1 A:ASP421 2.4 3.9 1.0 O A:HOH970 2.4 30.0 1.0 ND1 A:HIS403 2.4 5.0 1.0 O A:HOH855 2.4 5.5 1.0 CD2 A:HIS457 3.1 3.7 1.0 CG A:ASP421 3.2 4.0 1.0 CE1 A:HIS403 3.2 5.1 1.0 OD2 A:ASP421 3.3 5.6 1.0 CE1 A:HIS457 3.3 9.1 1.0 CG A:HIS403 3.5 7.2 1.0 CB A:HIS403 3.9 7.4 1.0 O A:ARG451 4.1 5.6 1.0 N A:GLY423 4.1 5.8 1.0 O A:HOH922 4.2 8.1 1.0 N A:SER298 4.3 3.3 1.0 O A:GLY423 4.3 2.8 1.0 CG A:HIS457 4.3 6.1 1.0 NE2 A:HIS403 4.4 4.4 1.0 ND1 A:HIS457 4.4 4.0 1.0 O A:SER298 4.4 6.0 1.0 OD2 A:ASP405 4.5 3.3 1.0 O A:ASN296 4.5 3.9 1.0 CD2 A:HIS403 4.5 3.8 1.0 CA A:GLY423 4.6 5.6 1.0 CB A:ASP421 4.6 6.5 1.0 CA A:TYR297 4.7 5.4 1.0 N A:PHE422 4.7 7.6 1.0 C A:GLY423 4.7 6.2 1.0 CB A:ASP405 4.8 3.6 1.0 C A:TYR297 4.8 7.3 1.0 CA A:SER298 5.0 4.6 1.0

L.Wei, H.Y.Cao, F.C.Li. The Crystal Structure of Glycosaminoglycan Lyase Gagase VII To Be Published.