Manganese in PDB 8jgp: Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate

The structure of Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate, PDB code: 8jgp was solved by Y.Zhao, S.Dai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.14 / 3.02
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	168.25, 168.25, 39.84, 90, 90, 120
R / Rfree (%)	26.4 / 31.7

The binding sites of Manganese atom in the Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate (pdb code 8jgp). This binding sites where shown within 5.0 Angstroms radius around Manganese atom.
In total only one binding site of Manganese was determined in the Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate, PDB code: 8jgp:

Manganese binding site 1 out of 1 in the Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate


Mono view


Stereo pair view

A full contact list of Manganese with other atoms in the Mn binding site number 1 of Crystal Structure of Deinococcus Radiodurans Exopolyphosphatase Complexed with Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mn602 b:113.4 occ:1.00 NE2 A:HIS340 2.4 87.2 1.0 NE2 A:HIS377 2.6 97.1 1.0 OD1 A:ASP453 2.9 78.0 1.0 OE2 A:GLU378 2.9 94.1 1.0 CD2 A:HIS340 3.0 88.0 1.0 OD2 A:ASP453 3.1 82.0 1.0 CD2 A:HIS377 3.1 98.6 1.0 CG A:ASP453 3.3 87.7 1.0 CG A:GLU378 3.5 91.5 1.0 CD A:GLU378 3.5 91.4 1.0 CE1 A:HIS340 3.6 85.0 1.0 CE1 A:HIS377 3.8 99.2 1.0 CG A:HIS340 4.3 74.9 1.0 CG A:HIS377 4.4 103.6 1.0 ND1 A:HIS340 4.5 76.0 1.0 OE1 A:GLU378 4.6 85.5 1.0 ND1 A:HIS377 4.7 96.4 1.0 CB A:ASP453 4.7 83.8 1.0 CB A:GLU378 4.9 94.6 1.0

S.Dai, B.Wang, R.Ye, D.Zhang, Z.Xie, N.Yu, C.Cai, C.Huang, J.Zhao, F.Zhang, Y.Hua, Y.Zhao, R.Zhou, B.Tian. Structural Evolution of Bacterial Polyphosphate Degradation Enzyme For Phosphorus Cycling. Adv Sci 09602 2024.
ISSN: ESSN 2198-3844
PubMed: 38682481
DOI: 10.1002/ADVS.202309602